Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.1e-132 474.2 243 100.0
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.2e-129 465.7 243 98.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.9e-69 266.5 231 61.5
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 3.7e-68 262.3 229 60.3
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 3.4e-66 255.8 227 61.2
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.0e-65 254.2 224 60.3
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 2.2e-65 253.1 230 59.1
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 2.2e-65 253.1 226 59.7
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.2e-65 253.1 229 62.4
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.9e-64 250.0 228 59.6
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.5e-64 249.6 224 60.3
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 3.2e-64 249.2 237 56.1
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 3.2e-64 249.2 228 60.5
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 5.5e-64 248.4 225 60.0
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 9.4e-64 247.7 224 58.5
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.2e-63 247.3 230 58.3
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 3.6e-63 245.7 230 58.3
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 3.0e-62 242.7 232 56.5
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 3.0e-62 242.7 232 59.5
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 3.9e-62 242.3 232 57.8
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 3.9e-62 242.3 227 57.3
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 5.1e-62 241.9 230 56.5
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 6.7e-62 241.5 223 58.7
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 6.7e-62 241.5 227 57.7
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 4.3e-61 238.8 195 64.1
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 9.7e-61 237.7 224 57.1
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 9.7e-61 237.7 230 54.8
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 9.7e-61 237.7 227 56.8
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.7e-60 236.9 227 54.6
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.7e-60 236.9 230 58.3
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.7e-60 236.9 227 57.7
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 2.8e-60 236.1 230 54.8
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 4.8e-60 235.3 227 55.1
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 4.8e-60 235.3 229 56.3
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 6.3e-60 235.0 214 58.9
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 8.2e-60 234.6 227 56.4
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 8.2e-60 234.6 227 56.8
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.1e-59 234.2 230 53.0
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.1e-59 234.2 230 53.0
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.4e-59 233.8 233 56.7
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.4e-59 233.8 226 54.0
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.8e-59 233.4 228 57.0
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 3.1e-59 232.6 227 56.4
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 3.1e-59 232.6 228 54.8
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.1e-59 232.6 230 53.9
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 4.1e-59 232.3 227 55.5
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 5.3e-59 231.9 227 55.1
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 5.3e-59 231.9 228 56.6
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 5.3e-59 231.9 225 55.1
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.2e-58 230.7 227 55.5
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 2.6e-58 229.6 230 52.6
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.4e-58 229.2 222 52.7
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 4.5e-58 228.8 230 56.1
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 4.5e-58 228.8 231 52.4
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 7.7e-58 228.0 227 56.4
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 7.7e-58 228.0 227 55.1
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.3e-57 227.3 186 61.8
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.3e-57 227.3 210 56.7
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.3e-57 227.3 231 56.3
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.3e-57 227.3 231 56.3
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.3e-57 227.3 226 56.2
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-57 226.9 230 52.2
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.7e-57 226.9 229 56.8
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 2.2e-57 226.5 230 55.7
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.9e-57 226.1 188 62.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 2.9e-57 226.1 212 58.0
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.8e-57 225.7 230 52.2
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.8e-57 225.7 227 55.9
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 8.5e-57 224.6 227 52.4
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.1e-56 224.2 253 50.2
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.1e-56 224.2 204 56.9
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.4e-56 223.8 204 60.3
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 3.2e-56 222.6 233 52.8
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 3.2e-56 222.6 224 53.6
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.2e-56 222.2 229 55.9
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 7.2e-56 221.5 231 55.0
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 7.2e-56 221.5 226 54.9
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 9.4e-56 221.1 232 52.2
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.2e-55 220.7 233 52.4
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 2.1e-55 219.9 232 50.9
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 2.1e-55 219.9 231 54.5
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.7e-55 219.5 224 53.6
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 2.7e-55 219.5 227 54.2
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 6.1e-55 218.4 227 52.4
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 6.1e-55 218.4 234 55.1
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.8e-54 216.9 233 51.1
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.8e-54 216.9 207 57.0
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 3.9e-54 215.7 207 56.5
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 6.7e-54 214.9 235 50.2
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 6.7e-54 214.9 235 50.2
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 6.7e-54 214.9 194 59.8
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.1e-53 214.2 212 54.7
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.5e-53 213.8 187 59.9
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.5e-53 213.8 239 51.0
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 5.7e-53 211.8 198 56.6
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 9.7e-53 211.1 193 59.6
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 9.7e-53 211.1 193 59.6
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.7e-52 210.3 233 52.8
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.7e-52 210.3 193 59.1
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 2.2e-52 209.9 203 58.1
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 4.8e-52 208.8 235 52.8
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 4.1e-51 205.7 226 51.8
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 9.1e-51 204.5 207 53.6
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.5e-50 203.8 207 53.1
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 2.6e-50 203.0 238 53.8
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 7.7e-50 201.4 196 53.1
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.0e-49 201.1 226 51.3
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.7e-49 200.3 219 53.9
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.8e-49 199.1 236 50.0
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.5e-48 197.2 168 60.7
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.5e-48 196.4 197 58.4
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 9.4e-48 194.5 225 49.3
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.2e-47 194.1 227 51.1
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.6e-47 193.7 202 51.5
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.7e-47 192.2 197 56.9
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 4.7e-47 192.2 197 56.9
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.0e-46 191.0 198 54.0
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 5.2e-46 188.7 231 49.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.8e-46 188.0 247 44.9
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.7e-44 183.7 257 44.0
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 8.2e-44 181.4 256 43.4
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 2.4e-43 179.9 212 51.4
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 4.1e-43 179.1 218 45.4
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-42 177.2 154 58.4
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-42 177.2 154 59.1
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.6e-42 177.2 154 59.1
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 5.9e-42 175.3 154 57.8
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.0e-41 174.5 138 63.8
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.3e-41 174.1 257 41.2
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.0e-41 172.2 189 52.4
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.5e-40 169.9 211 45.0
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.4e-40 167.9 185 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.1e-39 166.8 192 50.5
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.0e-38 164.5 191 50.3
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.0e-37 160.2 192 50.5
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.6e-37 159.8 170 53.5
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 2.2e-36 156.8 120 64.2
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.4e-35 154.1 219 43.8
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 9.1e-35 151.4 233 39.9
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.3e-33 147.5 227 41.0
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 1.9e-32 143.7 232 40.1
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.2e-32 142.9 193 45.1
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 4.2e-32 142.5 131 53.4
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.7e-31 139.0 194 43.3
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.8e-30 134.8 114 60.5
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 2.2e-28 130.2 88 71.6
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.4e-27 127.5 90 71.1
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 5.9e-26 122.1 97 62.9
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.0e-25 119.0 193 37.3
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 4.1e-19 99.4 103 53.4
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.3e-17 94.4 110 51.8
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 3.6e-15 86.3 78 60.3
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.8e-14 82.0 147 42.9
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 3.0e-09 66.6 85 47.1
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 8.6e-09 65.1 93 37.6
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 7.3e-08 62.0 85 44.7
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 3.6e-07 59.7 63 55.6
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 1.4e-06 57.8 115 35.7


User provided reference genes

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