Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 5.4e-234 813.9 398 100.0
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 2.5e-231 805.1 398 98.7
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 6.3e-150 534.6 407 66.3
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 5.3e-149 531.6 407 65.4
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 3.4e-148 528.9 385 68.1
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.7e-147 526.6 408 65.4
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.4e-146 523.5 396 67.2
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 2.5e-146 522.7 410 65.4
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 3.2e-146 522.3 399 64.7
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 5.5e-146 521.5 388 66.2
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 9.4e-146 520.8 407 63.6
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 9.4e-146 520.8 394 66.5
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 2.7e-145 519.2 408 63.2
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 2.7e-145 519.2 388 65.2
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 3.6e-145 518.8 407 63.9
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 3.6e-145 518.8 379 68.1
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 1.0e-144 517.3 403 64.3
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 1.0e-144 517.3 383 67.6
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.4e-144 516.9 381 66.4
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 1.8e-144 516.5 386 66.3
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 3.0e-144 515.8 410 63.4
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 3.0e-144 515.8 386 66.3
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 3.0e-144 515.8 386 66.1
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 3.9e-144 515.4 406 63.3
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 5.1e-144 515.0 384 66.4
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.7e-144 514.6 389 65.6
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 6.7e-144 514.6 410 64.4
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 6.7e-144 514.6 410 64.6
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 8.8e-144 514.2 389 65.3
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.5e-143 513.5 389 65.3
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 1.5e-143 513.5 408 64.5
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.0e-143 513.1 390 65.4
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.0e-143 513.1 413 63.9
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 2.0e-143 513.1 388 65.2
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 4.4e-143 511.9 382 66.8
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 4.4e-143 511.9 382 66.2
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 7.4e-143 511.1 385 63.9
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 2.8e-142 509.2 402 63.9
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.8e-142 508.4 390 64.6
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.8e-142 508.4 415 62.2
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 8.2e-142 507.7 388 64.4
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 1.4e-141 506.9 397 63.7
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 1.4e-141 506.9 420 62.4
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.8e-141 506.5 413 62.5
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.4e-141 506.1 386 64.8
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.4e-141 506.1 404 65.3
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 3.1e-141 505.8 394 63.7
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 4.1e-141 505.4 404 62.6
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 7.0e-141 504.6 384 65.1
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 9.1e-141 504.2 387 64.6
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 9.1e-141 504.2 386 66.6
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.5e-140 503.4 388 64.4
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.5e-140 503.4 407 62.7
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 2.0e-140 503.1 406 63.3
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 2.6e-140 502.7 396 63.1
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.6e-140 502.7 413 62.5
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 3.5e-140 502.3 384 64.8
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 3.5e-140 502.3 402 62.7
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 3.5e-140 502.3 403 62.5
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 3.5e-140 502.3 392 63.3
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 4.5e-140 501.9 404 61.1
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 5.9e-140 501.5 391 65.7
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.0e-139 500.7 383 64.2
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 1.3e-139 500.4 391 65.7
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 2.2e-139 499.6 392 65.1
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 2.9e-139 499.2 418 63.2
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 2.9e-139 499.2 387 63.6
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 5.0e-139 498.4 404 63.6
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 5.0e-139 498.4 385 65.2
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 6.5e-139 498.0 412 62.1
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 8.5e-139 497.7 382 65.7
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.5e-138 496.9 383 63.4
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.5e-138 496.9 391 64.5
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.9e-138 496.5 394 64.7
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 2.5e-138 496.1 405 62.2
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 3.2e-138 495.7 380 65.0
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 3.2e-138 495.7 384 63.0
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 3.2e-138 495.7 400 63.2
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 5.5e-138 495.0 383 64.2
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 5.5e-138 495.0 395 63.5
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 7.2e-138 494.6 384 64.3
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 7.2e-138 494.6 419 62.3
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 9.4e-138 494.2 384 63.3
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 9.4e-138 494.2 394 64.0
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 1.2e-137 493.8 386 63.2
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 2.7e-137 492.7 451 57.9
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 3.6e-137 492.3 384 64.1
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 3.6e-137 492.3 384 64.1
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 3.6e-137 492.3 393 62.6
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 4.7e-137 491.9 391 62.9
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 3.0e-136 489.2 414 61.6
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 8.8e-136 487.6 407 61.4
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 1.1e-135 487.3 401 62.1
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 1.1e-135 487.3 385 63.1
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.5e-135 486.9 392 63.3
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 5.7e-135 485.0 401 61.8
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 5.7e-135 485.0 391 61.6
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 7.4e-135 484.6 388 62.4
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 2.2e-134 483.0 390 63.3
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.8e-134 482.6 388 63.4
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.8e-134 482.6 388 63.4
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 8.2e-134 481.1 394 61.9
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.8e-133 479.9 403 61.3
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 2.4e-133 479.6 384 63.3
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 2.4e-133 479.6 364 65.9
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 4.1e-133 478.8 336 69.0
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 2.6e-132 476.1 388 61.6
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 5.9e-132 474.9 390 61.3
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.7e-131 473.4 294 74.8
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 8.5e-131 471.1 409 58.9
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.1e-130 470.7 386 61.9
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 4.2e-130 468.8 384 60.2
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.6e-129 466.8 384 59.4
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 1.8e-128 463.4 421 57.5
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 5.2e-128 461.8 388 61.9
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 6.8e-128 461.5 329 67.5
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 8.8e-128 461.1 384 58.6
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.5e-127 460.3 386 60.6
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 2.0e-127 459.9 386 60.9
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.4e-127 459.1 390 60.3
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 2.2e-126 456.4 388 59.0
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 3.7e-126 455.7 417 58.0
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 1.3e-123 447.2 383 58.7
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.9e-122 443.4 380 58.7
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.9e-122 443.4 387 58.7
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.0e-116 423.3 244 79.5
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.6e-113 413.7 310 65.5
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.6e-111 406.4 404 55.4
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 9.5e-106 387.9 388 51.0
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.7e-105 385.6 250 72.8
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.4e-104 384.0 246 73.2
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 4.4e-103 379.0 409 49.9
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.2e-92 344.4 390 49.0
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 4.6e-92 342.4 254 65.0
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.3e-91 340.9 272 58.8
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 2.3e-91 340.1 282 61.3
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.3e-91 340.1 425 44.5
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.0e-83 313.2 283 56.9
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 4.4e-79 299.3 235 63.0
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 8.4e-78 295.0 281 54.4
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.3e-75 287.0 173 80.3
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.9e-70 269.2 197 70.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 3.8e-62 243.0 152 75.7
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 3.9e-59 233.0 274 45.3
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 7.6e-47 192.2 299 37.8
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.3e-41 174.9 170 54.7
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 7.2e-37 159.1 96 79.2
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 1.0e-35 155.2 203 44.3
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 1.4e-35 154.8 222 41.9
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 9.7e-34 148.7 82 76.8
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-32 145.2 296 32.8
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.6e-28 130.2 295 33.9
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 6.1e-28 129.4 167 43.7
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 3.0e-27 127.1 256 32.4
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.1e-26 125.2 244 34.0
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 3.7e-25 120.2 74 74.3
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 2.4e-24 117.5 274 31.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.3e-22 111.7 167 42.5
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.2e-22 110.9 62 77.4
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.0e-22 109.8 62 77.4
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.1e-21 108.6 62 75.8
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 2.1e-20 104.4 183 33.9
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.6e-20 103.6 163 39.3
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 6.1e-20 102.8 122 45.9
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 4.0e-19 100.1 249 31.3
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.8e-16 91.3 146 39.0
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 6.5e-14 82.8 168 33.9
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 4.4e-10 70.1 119 38.7
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.5e-10 69.3 38 81.6
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.7e-09 68.2 66 48.5
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 3.7e-09 67.0 94 40.4
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 8.5e-06 55.8 178 27.5


User provided reference genes

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