Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.6e-160 568.2 276 100.0
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 9.7e-158 560.1 276 98.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.3e-109 400.2 264 73.1
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 3.7e-109 398.7 249 75.9
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 8.9e-103 377.5 266 68.4
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.7e-101 372.1 266 68.0
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.7e-101 372.1 266 68.0
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.4e-100 370.2 253 70.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.4e-100 369.4 254 68.9
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 5.4e-100 368.2 255 69.0
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.6e-99 366.7 252 71.0
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 2.0e-99 366.3 255 71.0
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 2.7e-99 365.9 264 68.2
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 3.5e-99 365.5 268 66.8
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 3.5e-99 365.5 244 71.3
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 4.6e-99 365.2 268 66.0
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 7.8e-99 364.4 251 70.5
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.0e-98 364.0 280 64.3
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.0e-98 364.0 280 64.3
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.0e-98 364.0 280 64.3
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.3e-98 363.6 280 63.9
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.7e-98 363.2 282 64.2
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.7e-98 363.2 261 67.4
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.7e-98 363.2 272 65.8
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-98 363.2 251 70.1
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.3e-98 362.8 252 69.0
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.3e-98 362.8 272 67.6
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 3.0e-98 362.5 273 66.7
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 3.9e-98 362.1 248 69.8
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 5.0e-98 361.7 246 68.7
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 8.6e-98 360.9 282 63.5
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 8.6e-98 360.9 282 63.5
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.1e-97 360.5 255 69.8
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.5e-97 360.1 248 70.2
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 1.5e-97 360.1 250 69.6
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.5e-97 360.1 251 68.9
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.5e-97 360.1 251 69.3
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.9e-97 359.8 270 64.4
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.5e-97 359.4 262 66.8
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 2.5e-97 359.4 251 68.9
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 4.3e-97 358.6 263 67.7
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 5.6e-97 358.2 266 65.8
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 7.3e-97 357.8 248 67.7
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 9.5e-97 357.5 266 65.4
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.2e-96 357.1 255 68.6
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.6e-96 356.7 253 68.0
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.1e-96 356.3 251 68.5
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 2.1e-96 356.3 249 67.5
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.8e-96 355.9 236 71.2
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 6.2e-96 354.8 269 65.1
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 8.1e-96 354.4 248 68.1
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.1e-95 354.0 289 61.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.1e-95 354.0 248 68.1
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.1e-95 352.4 272 64.7
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.1e-95 352.4 251 67.7
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 4.0e-95 352.1 285 61.8
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 6.8e-95 351.3 269 64.3
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 6.8e-95 351.3 276 62.3
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 6.8e-95 351.3 263 66.5
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.0e-94 349.7 267 63.3
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 7.5e-94 347.8 267 64.4
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 1.3e-93 347.1 245 67.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 2.2e-93 346.3 255 67.1
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 2.2e-93 346.3 301 60.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 2.9e-93 345.9 267 63.3
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.1e-92 344.0 270 63.3
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 3.2e-92 342.4 247 67.6
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-91 340.5 246 68.7
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 1.2e-91 340.5 243 67.5
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 7.8e-91 337.8 248 64.5
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.3e-90 337.0 267 61.4
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 2.3e-90 336.3 280 60.4
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.5e-89 332.8 248 63.7
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 5.6e-89 331.6 237 66.2
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 1.2e-88 330.5 250 65.2
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 4.0e-87 325.5 243 65.4
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 4.0e-87 325.5 253 61.3
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 5.2e-87 325.1 250 62.0
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.5e-86 323.6 277 58.8
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.5e-86 323.6 249 63.1
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 5.8e-86 321.6 247 63.6
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.3e-85 320.5 272 57.7
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 9.2e-84 314.3 250 63.6
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 3.5e-83 312.4 246 63.8
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 6.6e-82 308.1 205 71.7
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.9e-81 306.6 242 61.6
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 2.1e-80 303.1 252 59.5
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 9.0e-79 297.7 207 69.6
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 5.1e-74 282.0 270 53.7
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.5e-73 280.4 253 53.8
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.1e-72 276.6 194 69.6
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 6.2e-72 275.0 237 58.6
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.8e-71 273.5 195 68.2
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 5.3e-71 271.9 250 57.2
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 1.3e-69 267.3 248 56.5
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.1e-68 264.2 248 56.0
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 3.5e-67 259.2 249 51.4
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.8e-64 248.8 300 48.0
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.1e-64 248.1 301 47.8
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 8.1e-64 248.1 279 47.0
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 5.3e-63 245.4 251 51.4
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 5.8e-62 241.9 247 49.8
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 9.9e-62 241.1 270 48.9
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.9e-60 236.9 269 48.3
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.2e-60 236.1 164 72.0
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.8e-58 230.3 265 47.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 9.6e-57 224.6 249 47.8
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.1e-56 223.4 170 67.1
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.9e-55 218.4 154 70.1
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.6e-54 216.5 244 48.0
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.8e-53 212.6 299 45.5
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 9.3e-52 208.0 256 44.1
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 2.4e-47 193.4 217 45.2
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 3.8e-45 186.0 236 43.6
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 8.5e-45 184.9 255 42.0
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 9.4e-44 181.4 288 38.5
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.8e-39 167.2 122 68.0
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.0e-34 149.8 115 67.0
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-27 127.9 85 67.1
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 2.7e-27 126.7 156 47.4
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 8.8e-26 121.7 76 73.7
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 5.0e-21 105.9 131 43.5
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 2.7e-19 100.1 215 31.2
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 2.7e-19 100.1 95 54.7
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.1e-15 86.7 89 47.2
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.2e-11 74.7 37 83.8
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 4.0e-10 69.7 78 50.0
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.5e-09 67.8 54 59.3
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 2.6e-09 67.0 37 78.4
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 2.6e-09 67.0 37 78.4
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 4.5e-06 56.2 42 61.9


User provided reference genes

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