Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 3.7e-238 827.8 407 100.0
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 2.1e-129 466.5 385 61.6
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 4.0e-128 462.2 382 60.7
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 6.9e-128 461.5 367 62.1
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 6.9e-128 461.5 374 60.7
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.5e-127 460.3 365 61.4
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 5.8e-127 458.4 415 55.9
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.7e-126 456.8 382 61.3
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 3.2e-125 452.6 394 57.9
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 4.2e-125 452.2 375 60.3
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 1.6e-124 450.3 390 59.2
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 2.1e-124 449.9 354 61.9
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.7e-124 449.5 353 61.8
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 2.7e-124 449.5 395 57.0
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 3.5e-124 449.1 365 62.2
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 4.6e-124 448.7 331 65.9
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 6.0e-124 448.4 382 59.4
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 7.9e-124 448.0 380 57.9
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 7.9e-124 448.0 392 60.5
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.3e-123 447.2 357 61.3
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.3e-123 447.2 370 60.8
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.3e-123 447.2 392 60.2
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 1.8e-123 446.8 343 62.4
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 3.0e-123 446.0 368 60.3
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 3.9e-123 445.7 395 58.2
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.5e-122 443.7 374 61.5
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 1.9e-122 443.4 424 53.5
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 1.9e-122 443.4 357 60.5
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.9e-122 443.4 355 62.3
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 2.5e-122 443.0 379 57.8
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 2.5e-122 443.0 334 63.8
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 2.5e-122 443.0 370 60.8
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.3e-122 442.6 364 60.2
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 3.3e-122 442.6 343 62.4
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 4.3e-122 442.2 399 55.6
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 5.7e-122 441.8 332 63.3
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 7.4e-122 441.4 345 61.7
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.3e-121 440.7 394 56.1
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.6e-121 440.3 425 54.1
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 4.8e-121 438.7 388 57.5
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 4.8e-121 438.7 345 61.4
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 4.8e-121 438.7 425 54.1
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 6.3e-121 438.3 353 59.2
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 6.3e-121 438.3 391 58.8
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.1e-120 437.6 389 57.6
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 1.8e-120 436.8 334 62.9
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 3.1e-120 436.0 364 58.5
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 6.9e-120 434.9 331 63.7
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 9.0e-120 434.5 391 57.0
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.2e-119 434.1 334 62.6
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.5e-119 433.7 389 56.3
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 2.0e-119 433.3 349 61.0
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 4.5e-119 432.2 351 60.7
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 5.9e-119 431.8 418 52.2
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 5.9e-119 431.8 324 63.0
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.0e-118 431.0 398 55.3
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 1.3e-118 430.6 374 57.0
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 1.3e-118 430.6 361 59.0
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 1.7e-118 430.3 381 58.0
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 5.0e-118 428.7 415 54.9
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 6.5e-118 428.3 351 60.4
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 8.5e-118 427.9 351 59.3
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.1e-117 427.6 411 54.5
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 3.2e-117 426.0 356 59.8
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 1.2e-116 424.1 351 58.4
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.2e-116 424.1 382 55.0
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.6e-116 423.7 384 54.9
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 1.6e-116 423.7 421 52.5
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 1.4e-115 420.6 383 55.1
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 2.3e-115 419.9 386 54.7
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 6.7e-115 418.3 348 58.9
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 6.7e-115 418.3 348 58.9
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 4.3e-114 415.6 352 57.7
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.3e-113 414.1 414 52.9
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 2.8e-113 412.9 407 52.8
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 6.3e-113 411.8 459 48.6
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 1.5e-111 407.1 301 63.5
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.4e-109 400.6 300 65.0
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 2.5e-109 399.8 308 62.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.6e-108 397.1 358 55.9
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.0e-107 394.4 295 64.1
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 3.9e-107 392.5 300 61.3
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 2.6e-106 389.8 323 61.3
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.3e-105 387.5 390 52.1
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.7e-105 386.0 449 47.7
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 8.2e-105 384.8 370 54.9
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 1.4e-104 384.0 345 57.7
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.2e-100 370.9 332 53.0
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 6.1e-100 368.6 351 55.6
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 7.4e-98 361.7 222 81.1
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 8.2e-97 358.2 373 48.8
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.8e-96 357.1 438 47.5
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 5.3e-96 355.5 333 55.9
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 8.5e-94 348.2 354 48.3
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 4.7e-92 342.4 325 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 6.1e-92 342.0 331 48.9
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 8.0e-92 341.7 393 50.4
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 2.9e-86 323.2 297 56.9
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.2e-84 317.8 394 47.0
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 5.7e-82 308.9 357 47.3
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 7.5e-82 308.5 199 71.4
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 3.7e-81 306.2 199 70.9
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 2.0e-79 300.4 199 70.4
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 2.7e-79 300.1 199 70.4
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.0e-75 288.1 272 55.5
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 1.2e-71 274.6 231 57.6
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 7.5e-66 255.4 324 40.7
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.6e-63 246.1 394 39.3
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 7.5e-58 228.8 181 60.2
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 1.0e-54 218.4 178 59.0
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 1.1e-53 214.9 176 63.6
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 2.8e-52 210.3 147 70.7
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 3.1e-51 206.8 165 61.8
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.4e-48 198.0 421 31.1
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 3.0e-46 190.3 301 36.9
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.5e-42 177.9 108 73.1
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 2.3e-38 164.1 112 65.2
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 2.3e-38 164.1 112 65.2
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.3e-36 158.3 122 62.3
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 4.8e-36 156.4 129 58.9
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 2.5e-29 134.0 99 59.6
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 4.8e-28 129.8 308 31.2
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 5.3e-27 126.3 73 74.0
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.8e-19 101.3 56 78.6
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.5e-18 96.7 299 26.8
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 2.5e-16 90.9 204 31.9
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 4.8e-12 76.6 98 40.8
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 9.3e-08 62.4 63 44.4
CBR_g24397 Chara braunii HOM05D005921 ORTHO05D132278 2.3e-06 57.8 100 33.0


User provided reference genes

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