Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000677 Vanilla planifolia HOM05D008584 ORTHO05D010813 1.2e-25 119.0 57 100.0
MD02G1062300 Malus domestica HOM05D008584 ORTHO05D010813 7.4e-12 73.2 43 74.4
CANSAT56G1052 Cannabis sativa HOM05D008584 ORTHO05D010813 9.7e-12 72.8 48 66.7
FAN28G0880 Fragaria x ananassa HOM05D008584 ORTHO05D010813 1.7e-11 72.0 43 72.1
RcHm_v2.0_Chr2g0091061 Rosa chinensis HOM05D008584 ORTHO05D010813 2.2e-11 71.6 43 72.1
Prupe.7G227100 Prunus persica HOM05D008584 ORTHO05D010813 1.1e-10 69.3 42 71.4
CiPaw.04G167100 Carya illinoinensis HOM05D008584 ORTHO05D010813 4.1e-10 67.4 47 61.7
Gohir.D07G004000 Gossypium hirsutum HOM05D008584 ORTHO05D010813 4.1e-10 67.4 41 70.7
Duzib168G0012 Durio zibethinus HOM05D008584 ORTHO05D010813 5.3e-10 67.0 45 68.9
Nn2g11826 Nelumbo nucifera HOM05D008584 ORTHO05D010813 6.9e-10 66.6 41 70.7
Thecc.09G114800 Theobroma cacao HOM05D008584 ORTHO05D010813 6.9e-10 66.6 45 64.4
Cc06_g09330 Coffea canephora HOM05D008584 ORTHO05D010813 9.1e-10 66.2 58 55.2
Os05g0179100 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 9.1e-10 66.2 53 64.2
Zm00001eb282970 Zea mays HOM05D008584 ORTHO05D010813 9.1e-10 66.2 39 74.4
Gohir.A05G021200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.0e-09 65.1 45 66.7
Gohir.D05G022600 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.0e-09 65.1 45 66.7
Manes.03G068582 Manihot esculenta HOM05D008584 ORTHO05D010813 2.0e-09 65.1 51 58.8
Nn8g39267 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.0e-09 65.1 47 61.7
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 2.0e-09 65.1 42 69.0
CsaV3_2G002450 Cucumis sativus L. HOM05D008584 ORTHO05D010813 2.6e-09 64.7 43 62.8
Manes.03G068566 Manihot esculenta HOM05D008584 ORTHO05D010813 2.6e-09 64.7 51 58.8
Phvul.011G012500 Phaseolus vulgaris HOM05D008584 ORTHO05D010813 2.6e-09 64.7 47 59.6
C08p08150 Brassica napus HOM05D008584 ORTHO05D010813 3.4e-09 64.3 48 58.3
BolC8t47667H Brassica oleracea HOM05D008584 ORTHO05D010813 3.4e-09 64.3 48 58.3
CSS0042146 Camellia sinensis var. sinensis HOM05D008584 ORTHO05D010813 4.5e-09 63.9 59 52.5
ClCG11G002630 Citrullus lanatus HOM05D008584 ORTHO05D010813 4.5e-09 63.9 43 65.1
A08p06820 Brassica napus HOM05D008584 ORTHO05D010813 2.2e-08 61.6 51 56.9
BraA08t32700Z Brassica rapa HOM05D008584 ORTHO05D010813 2.2e-08 61.6 51 56.9
CAN.G1710.8 Capsicum annuum HOM05D008584 ORTHO05D010813 2.9e-08 61.2 43 60.5
AL9U10260 Arabidopsis lyrata HOM05D008584 ORTHO05D010813 1.4e-07 58.9 42 61.9
CARHR218960 Cardamine hirsuta HOM05D008584 ORTHO05D010813 1.4e-07 58.9 46 58.7
AT4G13395 Arabidopsis thaliana HOM05D008584 ORTHO05D010813 2.5e-07 58.2 42 61.9
vmacro22125 Vaccinium macrocarpon HOM05D008584 ORTHO05D010813 3.2e-07 57.8 34 70.6
CsaV3_1G030850 Cucumis sativus L. HOM05D008584 ORTHO05D010813 5.5e-07 57.0 51 52.9
Sed0002148 Sechium edule HOM05D008584 ORTHO05D010813 5.5e-07 57.0 47 51.1
Carub.0007s2917 Capsella rubella HOM05D008584 ORTHO05D010813 7.2e-07 56.6 34 70.6
HPP92_005548 Vanilla planifolia HOM05D008584 ORTHO05D010813 1.2e-06 55.8 35 71.4
Os01g0178850 Oryza sativa ssp. japonica HOM05D008584 ORTHO05D010813 2.1e-06 55.1 34 67.6
Nn2g15804 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.7e-06 54.7 35 65.7
Nn2g15810 Nelumbo nucifera HOM05D008584 ORTHO05D010813 2.7e-06 54.7 35 65.7
Zm00001eb122380 Zea mays HOM05D008584 ORTHO05D010813 2.7e-06 54.7 33 69.7


User provided reference genes

Program Settings