Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.5e-209 731.9 365 100.0
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 3.3e-129 465.7 379 62.8
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 4.3e-129 465.3 333 67.9
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 5.8e-126 454.9 332 68.4
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 8.4e-125 451.1 346 63.0
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 1.9e-124 449.9 332 65.7
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 5.4e-124 448.4 360 63.6
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 5.4e-124 448.4 332 66.9
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 9.3e-124 447.6 358 62.3
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 9.3e-124 447.6 324 67.9
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.2e-123 447.2 333 65.2
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.1e-123 446.4 351 62.7
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 4.6e-123 445.3 360 62.5
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 6.0e-123 444.9 327 65.1
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.0e-122 444.1 340 63.5
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.0e-122 444.1 358 62.0
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 3.9e-122 442.2 298 70.5
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 5.1e-122 441.8 329 65.3
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 6.6e-122 441.4 355 62.8
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-121 440.3 330 67.0
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 1.9e-121 439.9 360 60.6
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 2.5e-121 439.5 306 69.0
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 2.5e-121 439.5 302 70.5
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 7.3e-121 438.0 302 70.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 7.3e-121 438.0 357 61.3
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 7.3e-121 438.0 335 63.6
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 9.6e-121 437.6 318 66.7
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 9.6e-121 437.6 307 68.4
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.1e-120 436.4 348 61.2
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.1e-120 436.4 305 70.5
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 2.1e-120 436.4 318 66.7
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 2.8e-120 436.0 364 61.5
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 4.8e-120 435.3 297 69.4
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 4.8e-120 435.3 365 58.4
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.1e-119 434.1 355 61.4
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 1.8e-119 433.3 318 66.4
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 4.0e-119 432.2 325 64.3
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 4.0e-119 432.2 344 63.1
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 9.0e-119 431.0 335 62.4
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 2.6e-118 429.5 290 70.7
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 3.4e-118 429.1 325 64.6
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 4.4e-118 428.7 306 65.7
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 5.8e-118 428.3 349 60.2
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 5.8e-118 428.3 327 63.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 7.6e-118 427.9 350 60.9
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 7.6e-118 427.9 297 68.7
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 9.9e-118 427.6 304 67.1
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.3e-117 427.2 322 65.8
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 1.7e-117 426.8 374 58.6
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.7e-117 426.8 356 60.7
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 3.8e-117 425.6 366 58.5
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 4.9e-117 425.2 320 63.1
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.4e-117 424.9 337 64.7
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.4e-116 423.7 349 59.3
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.4e-116 421.8 309 66.0
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 7.1e-116 421.4 304 65.8
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 7.1e-116 421.4 306 64.7
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 9.3e-116 421.0 348 59.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 9.3e-116 421.0 299 67.6
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.2e-115 420.6 302 65.2
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 6.0e-115 418.3 312 63.1
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 6.0e-115 418.3 301 66.8
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 1.0e-114 417.5 372 58.9
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 6.6e-114 414.8 309 65.4
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 6.6e-114 414.8 372 56.2
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 8.7e-114 414.5 371 56.9
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.1e-113 414.1 307 65.5
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.5e-113 413.7 303 66.0
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.9e-113 413.3 309 65.0
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.5e-113 412.9 351 59.5
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.3e-113 411.4 352 57.7
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.1e-112 409.8 355 58.3
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 3.6e-112 409.1 345 59.1
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 1.4e-111 407.1 334 59.6
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 4.0e-111 405.6 307 63.2
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 6.9e-111 404.8 328 59.8
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 6.9e-111 404.8 306 63.1
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 9.0e-111 404.4 310 62.9
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.5e-110 403.7 369 56.1
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.0e-110 403.3 323 60.7
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.0e-110 403.3 327 60.2
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.8e-110 401.7 314 61.8
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 9.9e-110 401.0 306 62.7
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-109 400.2 307 61.9
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 1.7e-109 400.2 307 61.9
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 2.4e-108 396.4 313 62.9
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 5.4e-108 395.2 301 62.5
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 2.1e-107 393.3 329 59.3
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.9e-105 386.7 373 52.3
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.8e-104 382.1 252 73.4
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.1e-99 366.7 358 52.8
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 7.9e-99 364.8 267 62.2
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 7.9e-99 364.8 267 62.2
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.3e-97 359.4 354 52.3
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 4.8e-96 355.5 276 60.5
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 3.1e-95 352.8 354 52.0
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.2e-94 350.9 334 55.1
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.5e-94 350.5 280 61.1
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.9e-89 333.6 279 60.2
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 1.4e-84 317.4 290 50.7
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.2e-84 316.2 291 48.5
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.7e-83 313.2 296 48.6
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 4.6e-83 312.4 290 50.0
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 7.9e-83 311.6 290 49.3
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 2.3e-82 310.1 246 61.0
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 3.0e-82 309.7 245 63.3
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 9.7e-81 304.7 291 47.4
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 1.3e-80 304.3 301 47.5
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 2.2e-80 303.5 296 47.0
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.2e-80 303.5 297 48.8
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.7e-80 302.8 288 49.3
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 4.8e-80 302.4 288 48.6
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 4.8e-80 302.4 297 47.8
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.3e-80 302.0 291 49.1
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 6.3e-80 302.0 291 47.1
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.2e-80 301.6 291 49.1
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-79 301.2 291 48.1
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.1e-79 301.2 289 49.8
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 3.1e-79 299.7 288 48.3
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 3.1e-79 299.7 305 47.2
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.2e-78 297.7 291 49.1
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.0e-78 297.0 291 49.5
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 5.9e-78 295.4 288 47.9
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 5.9e-78 295.4 288 47.9
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.9e-78 295.4 287 48.1
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-77 294.7 272 51.1
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 5.0e-77 292.4 293 46.8
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 6.5e-77 292.0 288 47.2
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 8.5e-77 291.6 269 54.3
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.5e-76 288.9 289 46.4
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 7.2e-76 288.5 288 46.2
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 3.6e-75 286.2 219 60.7
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 6.1e-75 285.4 292 47.3
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.1e-75 285.4 301 45.8
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.0e-74 284.6 292 46.9
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 6.7e-74 282.0 293 44.4
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 2.6e-73 280.0 292 46.6
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.6e-73 280.0 292 45.9
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 3.7e-72 276.2 278 48.2
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.1e-71 274.6 288 46.2
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-71 273.5 292 45.5
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.0e-69 265.8 271 44.3
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 4.8e-64 249.2 351 38.7
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.8e-63 247.3 292 44.9
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 7.0e-63 245.4 278 45.0
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 2.0e-62 243.8 241 48.5
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 3.5e-62 243.0 271 45.0
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 2.3e-58 230.3 284 44.0
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 4.0e-58 229.6 281 45.9
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 5.2e-58 229.2 212 51.9
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.6e-51 207.6 319 37.6
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-49 201.4 219 46.1
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 2.8e-48 196.8 199 46.7
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 2.8e-48 196.8 199 46.7
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.8e-42 177.6 181 49.2
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 9.8e-41 171.8 185 49.2
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.5e-36 157.1 128 53.1
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-35 154.5 128 53.1
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.6e-35 154.5 128 53.1
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 7.5e-33 145.6 148 47.3
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.4e-31 141.4 287 30.3
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.3e-29 134.0 85 78.8
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 3.3e-28 130.2 108 50.0
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 1.7e-24 117.9 432 26.9
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-23 114.8 148 41.9
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 1.3e-21 108.2 103 55.3
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 6.8e-10 69.3 56 58.9


User provided reference genes

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