Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.4e-98 361.3 186 100.0
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.3e-73 280.0 145 97.9
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.4e-59 233.4 141 80.1
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 3.1e-59 232.3 142 80.3
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 3.1e-59 232.3 142 80.3
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.4e-58 228.8 137 81.0
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 5.9e-58 228.0 138 79.7
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.3e-57 226.9 138 78.3
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.7e-57 226.5 139 78.4
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.9e-57 225.7 137 80.3
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 5.0e-57 224.9 140 77.9
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 8.5e-57 224.2 143 76.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 8.5e-57 224.2 137 79.6
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.4e-56 223.4 137 78.1
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.4e-56 223.4 137 78.1
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 3.2e-56 222.2 140 75.0
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 3.2e-56 222.2 141 75.9
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 4.2e-56 221.9 137 78.8
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 4.2e-56 221.9 140 77.1
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 5.5e-56 221.5 137 78.1
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 5.5e-56 221.5 137 77.4
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 7.2e-56 221.1 138 74.6
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 7.2e-56 221.1 137 77.4
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 7.2e-56 221.1 137 77.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 9.4e-56 220.7 137 77.4
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.2e-55 220.3 137 77.4
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.6e-55 219.9 137 77.4
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 2.1e-55 219.5 137 77.4
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.1e-55 219.5 136 76.5
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 3.6e-55 218.8 137 78.1
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.6e-55 218.8 139 73.4
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 4.7e-55 218.4 137 75.9
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 6.1e-55 218.0 139 74.1
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 6.1e-55 218.0 138 76.1
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 6.1e-55 218.0 136 77.2
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 7.9e-55 217.6 137 75.2
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 7.9e-55 217.6 137 76.6
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 7.9e-55 217.6 137 73.7
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.0e-54 217.2 137 73.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.0e-54 217.2 138 73.9
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 1.0e-54 217.2 137 75.9
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.4e-54 216.9 137 75.2
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.4e-54 216.9 137 75.2
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.4e-54 216.9 137 75.2
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.4e-54 216.9 137 74.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.4e-54 216.9 137 75.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.4e-54 216.9 138 74.6
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.4e-54 216.9 138 74.6
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.3e-54 216.1 138 74.6
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.3e-54 216.1 138 74.6
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.3e-54 216.1 138 74.6
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.3e-54 216.1 137 76.6
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 3.0e-54 215.7 138 74.6
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 3.9e-54 215.3 136 77.2
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.9e-54 215.3 137 74.5
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 3.9e-54 215.3 138 73.9
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.1e-54 214.9 137 75.2
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 5.1e-54 214.9 137 73.7
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 6.7e-54 214.5 145 70.3
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 8.8e-54 214.2 137 71.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.1e-53 213.8 134 76.1
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.1e-53 213.8 136 75.0
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.1e-53 213.8 137 75.2
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.1e-53 213.8 137 73.7
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 2.0e-53 213.0 137 73.7
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.0e-53 213.0 138 72.5
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.0e-53 213.0 137 74.5
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.0e-53 213.0 137 74.5
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.0e-53 213.0 136 75.7
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.0e-53 213.0 138 73.9
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.6e-53 212.6 138 71.7
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 3.3e-53 212.2 138 72.5
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 3.3e-53 212.2 138 72.5
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 3.3e-53 212.2 142 71.1
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.4e-53 211.8 138 73.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 5.7e-53 211.5 137 73.7
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 7.4e-53 211.1 137 73.7
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.4e-53 211.1 137 72.3
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 9.7e-53 210.7 139 71.2
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 9.7e-53 210.7 131 77.9
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 9.7e-53 210.7 131 77.9
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.3e-52 210.3 137 71.5
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.3e-52 210.3 137 71.5
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.8e-52 209.1 137 72.3
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 2.8e-52 209.1 138 73.9
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.7e-52 208.8 137 70.8
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.7e-52 208.8 137 70.1
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.7e-52 208.8 137 71.5
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 4.8e-52 208.4 137 73.0
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.8e-52 208.4 138 72.5
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 6.3e-52 208.0 137 73.7
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.1e-51 207.2 127 78.7
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.4e-51 206.1 142 70.4
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 3.1e-51 205.7 137 70.1
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 4.1e-51 205.3 133 73.7
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 7.0e-51 204.5 137 71.5
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.6e-50 202.6 131 73.3
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 5.9e-50 201.4 169 62.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 5.9e-50 201.4 142 69.7
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 7.7e-50 201.1 141 66.7
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.8e-49 198.7 155 65.2
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 5.0e-49 198.4 136 70.6
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.2e-47 193.7 137 64.2
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.1e-47 193.0 137 64.2
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.7e-47 192.6 122 73.8
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 3.6e-47 192.2 137 64.2
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 3.9e-46 188.7 117 75.2
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-45 187.2 125 69.6
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 4.4e-45 185.3 120 70.8
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.4e-45 184.5 109 80.7
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 7.4e-45 184.5 126 70.6
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.7e-44 183.3 159 61.6
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.7e-44 182.2 122 71.3
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.4e-43 180.3 109 75.2
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.6e-42 176.8 135 59.3
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 2.6e-42 176.0 136 61.8
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.5e-41 171.4 111 70.3
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 4.2e-40 168.7 133 67.7
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 7.2e-40 167.9 137 58.4
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 6.1e-39 164.9 105 73.3
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.0e-38 164.1 109 72.5
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 5.2e-38 161.8 132 62.1
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 5.2e-38 161.8 132 62.1
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.5e-37 157.9 138 59.4
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.2e-36 156.4 92 79.3
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.1e-35 154.1 138 58.7
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 3.5e-34 149.1 108 67.6
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 1.3e-33 147.1 135 53.3
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.7e-33 146.7 160 51.2
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 3.8e-33 145.6 126 58.7
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.1e-32 144.1 137 50.4
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.1e-31 139.8 145 50.3
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 2.7e-31 139.4 76 85.5
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 1.5e-29 133.7 78 78.2
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 2.4e-27 126.3 67 86.6
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 4.1e-27 125.6 130 46.2
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 6.1e-23 111.7 79 67.1
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 3.0e-22 109.4 146 47.3
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.2e-21 107.5 64 75.0
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.0e-21 106.7 59 81.4
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.7e-20 102.4 132 40.2
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.0e-17 94.4 136 41.2
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.0e-14 84.3 60 60.0
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 8.9e-14 81.3 134 30.6
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 8.3e-12 74.7 129 35.7
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.2e-10 70.9 102 37.3
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 8.9e-06 54.7 41 63.4


User provided reference genes

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