Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 6.2e-236 820.5 433 100.0
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 3.2e-46 190.3 310 45.5
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 8.1e-42 175.6 270 43.7
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.3e-36 158.3 269 42.8
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 3.0e-36 157.1 313 40.6
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 3.9e-36 156.8 315 40.0
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 6.6e-36 156.0 304 39.8
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 2.5e-35 154.1 313 39.9
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 4.3e-35 153.3 310 41.0
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 1.4e-33 148.3 281 38.8
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 4.0e-33 146.7 308 38.3
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 5.8e-32 142.9 309 39.8
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 7.6e-32 142.5 317 37.9
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 1.3e-31 141.7 334 37.7
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 3.7e-31 140.2 311 39.9
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 6.4e-31 139.4 313 39.6
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 8.4e-31 139.0 309 38.8
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 1.9e-30 137.9 314 38.2
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 3.2e-30 137.1 318 38.1
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 3.2e-30 137.1 294 39.5
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 5.4e-30 136.3 298 38.9
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 9.2e-30 135.6 331 36.6
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 1.2e-29 135.2 292 38.0
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 1.6e-29 134.8 329 36.5
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 2.7e-29 134.0 310 37.4
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 4.6e-29 133.3 296 36.1
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 6.0e-29 132.9 326 35.9
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 1.0e-28 132.1 276 39.1
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.3e-28 131.7 321 36.4
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 5.1e-28 129.8 319 36.1
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 6.6e-28 129.4 319 36.1
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 1.5e-27 128.3 292 36.6
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 1.5e-27 128.3 314 36.6
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.5e-27 127.5 292 38.7
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 2.5e-27 127.5 301 36.5
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 3.3e-27 127.1 310 38.1
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 4.3e-27 126.7 310 37.1
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 4.3e-27 126.7 310 35.8
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 5.6e-27 126.3 298 36.9
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 7.3e-27 125.9 291 35.7
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 7.3e-27 125.9 310 36.8
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 9.6e-27 125.6 331 34.4
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 9.6e-27 125.6 323 37.2
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 1.6e-26 124.8 332 36.7
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 3.6e-26 123.6 289 37.0
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 4.7e-26 123.2 293 36.2
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 8.1e-26 122.5 322 34.8
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.1e-25 122.1 310 37.1
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.4e-25 121.7 318 34.9
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 1.8e-25 121.3 310 35.8
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 2.4e-25 120.9 246 37.8
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 2.4e-25 120.9 297 37.4
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.1e-25 120.6 305 35.4
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 8.9e-25 119.0 314 36.0
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 2.0e-24 117.9 312 35.9
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.0e-24 117.9 309 34.0
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 2.6e-24 117.5 281 36.3
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.6e-24 117.5 295 38.3
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 3.4e-24 117.1 311 36.3
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 3.4e-24 117.1 311 37.0
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 5.8e-24 116.3 297 36.0
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 5.8e-24 116.3 297 37.4
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 9.9e-24 115.5 321 34.3
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 9.9e-24 115.5 296 35.8
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 1.3e-23 115.2 199 41.7
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 2.2e-23 114.4 310 33.2
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 2.9e-23 114.0 313 35.8
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 2.9e-23 114.0 295 35.9
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 3.8e-23 113.6 278 37.4
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 4.9e-23 113.2 319 34.5
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 6.4e-23 112.8 283 36.0
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 2.4e-22 110.9 247 40.5
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 2.4e-22 110.9 316 35.4
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 3.2e-22 110.5 261 37.2
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 3.2e-22 110.5 289 37.0
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.2e-22 110.2 128 48.4
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.2e-21 108.6 311 35.4
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.6e-21 108.2 232 38.4
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 6.0e-21 106.3 304 35.2
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 7.8e-21 105.9 301 32.6
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 1.7e-20 104.8 312 36.9
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 6.6e-20 102.8 335 33.1
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 8.7e-20 102.4 299 35.1
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.1e-19 102.1 274 34.7
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.9e-19 101.3 284 35.6
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 2.5e-19 100.9 275 35.6
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 2.5e-19 100.9 293 35.5
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.3e-19 100.5 298 33.6
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 4.3e-19 100.1 284 34.2
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 5.6e-19 99.8 183 41.5
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 1.3e-18 98.6 204 35.3
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 1.6e-18 98.2 211 36.5
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 2.1e-18 97.8 286 34.3
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 2.1e-18 97.8 175 42.9
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 4.8e-18 96.7 321 31.2
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 6.2e-18 96.3 307 36.2
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 1.1e-17 95.5 314 33.8
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 2.4e-17 94.4 273 34.4
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 2.4e-17 94.4 291 32.6
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 2.4e-17 94.4 288 34.7
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.5e-16 91.7 280 33.6
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 2.6e-16 90.9 87 54.0
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 2.6e-16 90.9 308 32.8
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 5.8e-16 89.7 275 33.5
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 5.8e-16 89.7 282 34.4
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 7.6e-16 89.4 355 30.1
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.3e-15 88.6 306 35.3
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 1.7e-15 88.2 274 32.5
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 2.2e-15 87.8 301 33.6
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 2.9e-15 87.4 318 31.1
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 2.9e-15 87.4 318 31.1
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 8.4e-15 85.9 300 33.0
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.4e-14 85.1 280 32.5
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.4e-14 85.1 309 31.4
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 1.9e-14 84.7 278 32.7
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 2.4e-14 84.3 283 33.6
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.2e-14 84.0 171 38.6
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 5.4e-14 83.2 284 32.7
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 1.6e-13 81.6 86 48.8
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 6.6e-12 76.3 194 35.1
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 8.7e-12 75.9 257 32.3
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 8.7e-12 75.9 257 32.3
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 4.3e-11 73.6 173 35.3
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 4.3e-11 73.6 278 30.9
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 9.6e-11 72.4 199 34.2
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.3e-10 72.0 163 35.0
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 4.8e-10 70.1 39 71.8
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 3.1e-09 67.4 188 35.6
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 2.0e-08 64.7 160 34.4


User provided reference genes

Program Settings