Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 6.9e-287 989.9 505 100.0
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 3.6e-49 200.3 469 33.9
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 1.1e-47 195.3 487 34.7
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 1.7e-46 191.4 515 33.4
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 2.8e-46 190.7 411 38.4
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 6.7e-40 169.5 436 34.6
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 7.4e-39 166.0 399 34.8
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.8e-38 163.3 408 35.5
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 4.8e-38 163.3 418 35.6
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 8.2e-38 162.5 416 32.7
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 1.8e-37 161.4 384 35.2
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 2.4e-37 161.0 474 33.8
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.1e-37 160.6 409 34.0
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.6e-36 158.3 478 32.0
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 4.5e-36 156.8 408 32.4
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.3e-35 155.2 414 30.7
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 3.8e-35 153.7 408 34.1
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 5.0e-35 153.3 400 33.0
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 6.5e-35 152.9 538 30.5
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 8.5e-35 152.5 373 33.5
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 1.1e-34 152.1 421 32.8
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 1.5e-34 151.8 481 31.6
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.5e-34 151.8 513 29.6
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 2.5e-34 151.0 409 33.7
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 2.5e-34 151.0 396 32.8
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.2e-34 150.6 402 33.1
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 4.2e-34 150.2 425 32.2
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 4.2e-34 150.2 465 28.6
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 7.2e-34 149.4 380 33.7
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 9.4e-34 149.1 402 33.3
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 9.4e-34 149.1 536 30.4
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 1.2e-33 148.7 417 34.1
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.6e-33 148.3 438 31.7
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 2.1e-33 147.9 402 32.6
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 2.1e-33 147.9 428 31.5
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.7e-33 147.5 376 33.5
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.7e-33 147.5 379 33.0
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 2.7e-33 147.5 379 33.2
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 3.6e-33 147.1 428 31.3
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 8.0e-33 146.0 390 32.1
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 8.0e-33 146.0 399 33.3
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 1.0e-32 145.6 439 31.2
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.0e-32 145.6 374 31.8
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.8e-32 144.8 439 31.0
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.8e-32 144.8 469 28.8
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.0e-32 144.1 394 33.2
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 3.0e-32 144.1 496 29.6
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 4.0e-32 143.7 380 35.5
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 5.2e-32 143.3 391 33.0
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.2e-31 142.1 418 32.3
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 1.5e-31 141.7 382 33.8
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.0e-31 141.4 407 31.2
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 2.0e-31 141.4 378 32.3
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 5.7e-31 139.8 394 32.7
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 7.5e-31 139.4 390 32.8
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 9.7e-31 139.0 469 31.1
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.3e-30 138.7 446 29.6
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 1.3e-30 138.7 443 31.4
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 2.2e-30 137.9 444 30.2
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 2.8e-30 137.5 383 33.4
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 3.7e-30 137.1 404 33.2
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 3.7e-30 137.1 507 30.0
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 3.7e-30 137.1 458 32.5
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 3.7e-30 137.1 452 30.8
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 6.3e-30 136.3 442 30.1
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 6.3e-30 136.3 435 31.5
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 8.2e-30 136.0 384 32.6
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 1.1e-29 135.6 379 30.9
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.4e-29 135.2 395 31.4
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 2.4e-29 134.4 395 31.1
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 2.4e-29 134.4 448 31.0
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 4.1e-29 133.7 447 32.2
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 9.1e-29 132.5 432 31.9
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 1.2e-28 132.1 404 29.2
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 2.0e-28 131.3 487 29.8
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 7.7e-28 129.4 413 30.5
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 1.0e-27 129.0 453 28.9
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 1.3e-27 128.6 458 30.6
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.8e-27 127.1 473 27.7
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 5.0e-27 126.7 395 29.9
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 6.5e-27 126.3 374 33.2
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 8.5e-27 125.9 398 30.2
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 8.5e-27 125.9 382 29.8
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 1.1e-26 125.6 387 31.5
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 1.1e-26 125.6 400 31.0
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.1e-26 125.6 397 31.2
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 2.5e-26 124.4 380 32.1
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 5.5e-26 123.2 407 29.5
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 4.7e-25 120.2 392 30.1
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 4.7e-25 120.2 434 30.6
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 4.7e-25 120.2 380 30.5
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 8.0e-25 119.4 389 29.6
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 8.0e-25 119.4 394 29.7
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.0e-24 119.0 373 34.0
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 1.4e-24 118.6 441 29.0
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 1.4e-24 118.6 415 29.9
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.3e-24 117.9 404 30.0
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 5.2e-24 116.7 411 31.4
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 8.8e-24 115.9 374 31.0
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.2e-23 115.5 383 31.6
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 1.5e-23 115.2 285 30.5
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 3.4e-23 114.0 484 29.1
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 4.4e-23 113.6 383 33.9
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 7.5e-23 112.8 432 28.2
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 1.7e-22 111.7 418 28.2
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 2.8e-22 110.9 261 36.8
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 3.7e-22 110.5 257 37.7
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 6.3e-22 109.8 515 27.4
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 3.1e-21 107.5 520 29.2
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 4.1e-21 107.1 381 28.6
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.5e-20 104.0 392 28.1
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 4.5e-20 103.6 366 29.2
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 4.5e-20 103.6 389 30.3
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 1.0e-19 102.4 366 27.9
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 1.3e-19 102.1 346 30.3
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 1.7e-19 101.7 408 29.7
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 1.7e-19 101.7 258 33.7
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 3.8e-19 100.5 405 27.7
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 3.8e-19 100.5 485 28.5
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 3.2e-18 97.4 387 28.2
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 9.5e-18 95.9 351 30.5
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 2.1e-17 94.7 294 29.9
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 2.1e-17 94.7 354 29.9
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 3.6e-17 94.0 239 35.6
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 4.7e-17 93.6 240 34.6
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 4.7e-17 93.6 222 33.8
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 6.1e-17 93.2 409 28.1
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 6.1e-17 93.2 255 33.7
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 6.1e-17 93.2 366 27.0
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.0e-16 92.4 366 27.0
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.8e-16 91.7 279 29.0
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.8e-16 91.7 388 26.8
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 2.3e-16 91.3 260 33.8
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 3.0e-16 90.9 254 32.3
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 4.0e-16 90.5 365 26.8
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 5.2e-16 90.1 365 27.1
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 6.8e-16 89.7 383 27.7
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 2.6e-15 87.8 365 26.8
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 3.4e-15 87.4 399 25.6
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 3.4e-15 87.4 235 32.8
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 7.5e-15 86.3 397 25.7
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.3e-14 85.5 298 28.5
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 2.2e-14 84.7 377 26.8
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 2.8e-14 84.3 365 27.9
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 6.3e-14 83.2 257 32.7
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 6.3e-14 83.2 416 27.9
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 8.3e-14 82.8 270 32.6
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 1.8e-13 81.6 363 26.2
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 4.1e-13 80.5 415 27.0
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 7.0e-13 79.7 233 32.6
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 7.0e-13 79.7 252 31.0
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.5e-12 77.0 250 28.4
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 1.0e-11 75.9 267 30.3
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 1.3e-11 75.5 363 25.3
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.7e-11 75.1 233 31.8
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 3.3e-10 70.9 227 31.7
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 4.3e-10 70.5 225 31.6
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 7.3e-10 69.7 253 28.1
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 1.2e-09 68.9 365 25.5
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 1.6e-09 68.6 237 28.7
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 6.1e-09 66.6 316 27.5
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 1.4e-08 65.5 249 28.9
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.8e-08 65.1 225 31.1
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 2.3e-08 64.7 232 25.4
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 8.9e-08 62.8 225 30.7
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 1.2e-07 62.4 369 23.3
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 1.5e-07 62.0 231 28.6
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 2.0e-07 61.6 234 30.8
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 2.6e-07 61.2 369 25.2
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 3.4e-07 60.8 225 28.9
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 3.4e-07 60.8 225 28.9
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 3.4e-07 60.8 364 25.3
SGA_v2.0_scaffold36G14460 Striga asiatica HOM05D003672 ORTHO05D004121 4.4e-07 60.5 227 29.5
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 7.5e-07 59.7 288 25.0
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 1.3e-06 58.9 118 36.4
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 1.3e-06 58.9 225 29.8
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 1.7e-06 58.5 441 24.0
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.9e-06 57.8 125 40.0
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 8.3e-06 56.2 413 24.9


User provided reference genes

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