Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 3.3e-26 120.9 61 100.0
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 1.1e-16 89.4 51 88.2
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 1.4e-16 89.0 51 86.3
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.4e-16 89.0 51 88.2
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.4e-16 89.0 51 88.2
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.4e-16 89.0 51 88.2
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 1.4e-16 89.0 51 88.2
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.4e-16 89.0 46 97.8
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.8e-16 88.6 51 88.2
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.8e-16 88.6 51 86.3
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 1.8e-16 88.6 51 86.3
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.8e-16 88.6 51 86.3
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 2.4e-16 88.2 51 86.3
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 3.1e-16 87.8 51 88.2
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 3.1e-16 87.8 51 86.3
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 4.1e-16 87.4 54 83.3
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 4.1e-16 87.4 51 86.3
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 4.1e-16 87.4 51 84.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 5.3e-16 87.0 51 86.3
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 5.3e-16 87.0 51 86.3
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 5.3e-16 87.0 51 86.3
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 5.3e-16 87.0 51 86.3
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 5.3e-16 87.0 51 84.3
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 5.3e-16 87.0 51 86.3
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 5.3e-16 87.0 53 81.1
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 6.9e-16 86.7 51 86.3
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 6.9e-16 86.7 51 84.3
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 6.9e-16 86.7 51 86.3
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 6.9e-16 86.7 51 86.3
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 6.9e-16 86.7 51 86.3
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 6.9e-16 86.7 51 84.3
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 9.0e-16 86.3 51 86.3
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 9.0e-16 86.3 51 86.3
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 9.0e-16 86.3 51 86.3
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 9.0e-16 86.3 51 86.3
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 9.0e-16 86.3 51 86.3
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 9.0e-16 86.3 51 84.3
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 9.0e-16 86.3 51 86.3
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 84.3
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 84.3
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 84.3
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 84.3
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 84.3
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 86.3
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 84.3
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 86.3
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 84.3
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 84.3
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 1.2e-15 85.9 51 86.3
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 1.5e-15 85.5 51 84.3
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.5e-15 85.5 51 84.3
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 1.5e-15 85.5 51 84.3
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 1.5e-15 85.5 51 84.3
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.5e-15 85.5 51 84.3
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.5e-15 85.5 51 84.3
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.5e-15 85.5 51 86.3
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.5e-15 85.5 51 84.3
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 86.3
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 86.3
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 82.4
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 84.3
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 2.0e-15 85.1 51 82.4
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 2.6e-15 84.7 51 82.4
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.6e-15 84.7 51 84.3
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 2.6e-15 84.7 51 84.3
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 2.6e-15 84.7 51 84.3
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 2.6e-15 84.7 51 84.3
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 2.6e-15 84.7 51 82.4
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 3.4e-15 84.3 51 84.3
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 3.4e-15 84.3 51 84.3
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 3.4e-15 84.3 51 82.4
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 3.4e-15 84.3 51 80.4
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 3.4e-15 84.3 51 84.3
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 3.4e-15 84.3 51 84.3
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.4e-15 84.3 51 84.3
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.4e-15 84.3 51 84.3
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 4.5e-15 84.0 51 84.3
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 4.5e-15 84.0 51 84.3
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 4.5e-15 84.0 51 84.3
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 4.5e-15 84.0 51 84.3
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 4.5e-15 84.0 51 84.3
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 4.5e-15 84.0 51 84.3
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 4.5e-15 84.0 51 84.3
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 4.5e-15 84.0 51 82.4
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 4.5e-15 84.0 51 84.3
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 5.9e-15 83.6 51 80.4
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 5.9e-15 83.6 51 80.4
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 5.9e-15 83.6 51 82.4
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 7.7e-15 83.2 51 82.4
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 7.7e-15 83.2 51 82.4
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 7.7e-15 83.2 51 82.4
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 7.7e-15 83.2 51 82.4
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 7.7e-15 83.2 51 82.4
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 7.7e-15 83.2 51 82.4
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 7.7e-15 83.2 51 80.4
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 7.7e-15 83.2 51 82.4
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 7.7e-15 83.2 51 82.4
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 82.4
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 82.4
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 82.4
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 82.4
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 82.4
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 82.4
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 80.4
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 78.4
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 82.4
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 82.4
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.0e-14 82.8 51 82.4
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 1.3e-14 82.4 51 82.4
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 1.3e-14 82.4 51 80.4
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 1.3e-14 82.4 51 82.4
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.7e-14 82.0 51 84.3
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 1.7e-14 82.0 52 84.6
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 2.2e-14 81.6 51 80.4
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 2.2e-14 81.6 51 82.4
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 2.9e-14 81.3 51 82.4
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 2.9e-14 81.3 52 84.6
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 5.0e-14 80.5 52 84.6
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 5.0e-14 80.5 52 84.6
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 5.0e-14 80.5 52 82.7
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 5.0e-14 80.5 52 82.7
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 6.5e-14 80.1 51 80.4
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 6.5e-14 80.1 51 82.4
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 1.1e-13 79.3 51 80.4
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 1.1e-13 79.3 52 80.8
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 1.1e-13 79.3 52 80.8
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 1.1e-13 79.3 52 80.8
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 1.1e-13 79.3 52 80.8
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 1.1e-13 79.3 54 79.6
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.4e-13 79.0 52 80.8
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 1.4e-13 79.0 52 78.8
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 1.9e-13 78.6 52 78.8
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 2.5e-13 78.2 52 80.8
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 4.2e-13 77.4 54 77.8
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 9.4e-13 76.3 51 78.4
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 1.2e-12 75.9 50 78.0
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 1.2e-12 75.9 51 74.5
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 1.6e-12 75.5 46 82.6
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 3.6e-12 74.3 51 80.4
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 7.9e-12 73.2 51 70.6
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 7.9e-12 73.2 51 70.6
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 8.8e-11 69.7 50 70.0
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 1.1e-10 69.3 39 87.2
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 5.7e-10 67.0 37 91.9
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 3.7e-09 64.3 44 77.3


User provided reference genes

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