Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 3.3e-256 887.9 453 100.0
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 3.2e-251 871.3 453 98.5
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 5.7e-139 498.4 454 59.0
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 1.1e-137 494.2 453 57.8
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.4e-137 493.8 456 58.1
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 1.2e-136 490.7 460 57.4
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.0e-136 490.0 456 57.7
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 5.9e-136 488.4 456 58.6
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 1.3e-135 487.3 462 57.4
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.3e-135 487.3 454 58.6
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 8.5e-135 484.6 455 57.6
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 8.5e-135 484.6 451 56.8
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 2.5e-134 483.0 455 58.9
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 2.5e-134 483.0 455 57.8
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 1.6e-133 480.3 460 58.3
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 2.3e-132 476.5 460 57.4
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 3.9e-132 475.7 436 58.7
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 6.7e-132 474.9 461 57.7
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 8.8e-132 474.6 471 53.3
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 8.8e-132 474.6 453 56.3
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 2.0e-131 473.4 454 57.0
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 3.3e-131 472.6 455 58.9
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 3.3e-131 472.6 457 58.4
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 4.4e-131 472.2 452 57.5
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 4.4e-131 472.2 458 56.8
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 1.3e-130 470.7 454 57.0
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 2.2e-130 469.9 454 56.8
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 3.7e-130 469.2 461 56.6
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 8.2e-130 468.0 466 57.5
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 1.1e-129 467.6 454 54.4
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.4e-129 467.2 455 54.5
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 7.0e-129 464.9 458 55.2
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 9.1e-129 464.5 453 56.1
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 1.5e-128 463.8 459 57.5
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 4.5e-128 462.2 453 55.6
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 4.5e-128 462.2 416 59.4
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 1.0e-127 461.1 454 52.9
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 1.0e-127 461.1 352 66.2
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 1.3e-127 460.7 494 51.8
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 1.3e-127 460.7 458 53.1
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 2.9e-127 459.5 442 55.9
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 3.8e-127 459.1 442 55.9
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 3.8e-127 459.1 455 56.9
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 3.8e-127 459.1 457 54.3
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 5.0e-127 458.8 465 53.3
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 8.5e-127 458.0 471 53.9
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 1.1e-126 457.6 455 53.6
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 3.2e-126 456.1 467 56.5
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 5.5e-126 455.3 349 66.5
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 5.5e-126 455.3 453 56.7
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 7.2e-126 454.9 458 54.1
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 9.4e-126 454.5 456 55.3
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.6e-125 453.8 345 67.5
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 2.1e-125 453.4 451 54.3
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 6.1e-125 451.8 459 54.7
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 8.0e-125 451.4 456 52.2
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.0e-124 451.1 457 53.6
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 1.8e-124 450.3 459 54.9
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.1e-123 447.6 459 55.3
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.5e-123 447.2 453 54.5
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.5e-123 447.2 453 54.3
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.0e-123 446.8 455 53.6
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 3.3e-123 446.0 455 55.8
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 4.4e-123 445.7 468 55.3
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 5.7e-123 445.3 454 53.5
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 5.7e-123 445.3 455 52.7
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 1.3e-122 444.1 452 56.2
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 2.8e-122 443.0 459 55.3
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 3.7e-122 442.6 479 52.0
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 4.8e-122 442.2 457 53.8
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 1.4e-121 440.7 455 54.9
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 5.3e-121 438.7 389 58.1
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 5.3e-121 438.7 454 54.4
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 9.1e-121 438.0 473 51.8
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.2e-120 437.6 481 50.7
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 5.9e-120 435.3 461 51.4
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 7.7e-120 434.9 477 52.0
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 7.2e-118 428.3 458 52.2
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 9.4e-118 427.9 454 51.8
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.6e-117 427.2 351 62.4
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 1.6e-117 427.2 426 55.2
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 6.7e-116 421.8 462 51.9
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 8.8e-116 421.4 386 59.1
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 3.3e-115 419.5 351 61.0
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 4.4e-115 419.1 351 61.0
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 4.8e-114 415.6 474 53.8
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 2.4e-113 413.3 462 53.0
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.1e-110 404.4 404 55.4
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.1e-109 400.2 341 60.4
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 4.7e-109 399.1 466 50.0
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 6.1e-109 398.7 476 46.2
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 8.0e-109 398.3 341 61.6
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 2.6e-107 393.3 308 64.9
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 3.4e-107 392.9 482 48.3
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 8.3e-106 388.3 259 72.6
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 4.1e-105 386.0 378 53.2
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.0e-100 371.3 347 57.3
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 2.3e-100 370.2 373 57.1
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 3.7e-98 362.8 259 66.4
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 4.1e-97 359.4 421 49.4
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 1.9e-94 350.5 355 52.7
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 7.3e-94 348.6 346 53.2
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 1.4e-92 344.4 364 51.6
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.1e-92 343.2 257 65.4
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.5e-91 340.9 364 49.2
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 3.4e-91 339.7 367 50.7
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 1.7e-90 337.4 344 54.9
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.1e-86 324.7 358 54.5
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.8e-84 317.4 276 59.4
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 5.8e-83 312.4 342 50.6
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 3.7e-82 309.7 335 51.0
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 7.0e-81 305.4 295 55.9
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 3.5e-80 303.1 247 60.7
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 4.0e-76 289.7 306 52.6
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.2e-50 204.1 453 35.5
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 1.3e-45 188.3 238 48.3
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.9e-44 182.6 342 36.3
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 3.4e-43 180.3 264 40.2
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 6.4e-42 176.0 166 53.6
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 3.7e-37 160.2 266 39.1
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 1.1e-30 138.7 352 31.5
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.4e-28 131.7 134 55.2
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.0e-26 125.6 125 54.4
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 1.2e-24 118.6 96 58.3
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 5.1e-23 113.2 191 33.0
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.0e-22 111.3 126 46.8
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 9.7e-22 109.0 60 76.7
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 5.3e-20 103.2 194 39.7
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 4.7e-16 90.1 200 34.0
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 2.2e-13 81.3 74 56.8
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 1.3e-10 72.0 131 38.2
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.3e-07 61.2 82 45.1
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 2.0e-06 58.2 99 39.4


User provided reference genes

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