Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000243 Vanilla planifolia HOM05D005327 ORTHO05D006655 2.5e-104 382.1 188 100.0
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 1.9e-64 249.6 165 77.0
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 2.0e-50 203.0 136 72.8
Peaxi162Scf00889g00111 Petunia axillaris HOM05D005327 ORTHO05D006655 2.7e-50 202.6 136 72.1
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 1.3e-49 200.3 135 71.9
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 2.3e-49 199.5 135 71.9
CSS0021007 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 2.3e-49 199.5 133 69.9
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 3.0e-49 199.1 135 71.9
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 3.0e-49 199.1 139 71.2
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 3.9e-49 198.7 136 71.3
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 5.0e-49 198.4 135 71.1
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 5.0e-49 198.4 136 71.3
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 6.6e-49 198.0 136 69.1
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 1.5e-48 196.8 136 68.4
BcaC05g29437 Brassica carinata HOM05D005327 ORTHO05D006655 1.9e-48 196.4 136 69.9
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 2.5e-48 196.1 179 59.8
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 3.3e-48 195.7 179 58.7
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 4.3e-48 195.3 152 64.5
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 7.3e-48 194.5 136 67.6
Sopen00g011970 Solanum pennellii HOM05D005327 ORTHO05D006655 7.3e-48 194.5 135 68.9
Sopen07g005500 Solanum pennellii HOM05D005327 ORTHO05D006655 7.3e-48 194.5 135 68.9
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 9.5e-48 194.1 178 57.9
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 9.5e-48 194.1 133 72.2
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 1.6e-47 193.4 136 70.6
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 1.6e-47 193.4 179 57.0
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.6e-47 193.4 132 70.5
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 2.8e-47 192.6 135 68.1
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 3.6e-47 192.2 136 69.1
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 3.6e-47 192.2 183 57.9
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 3.6e-47 192.2 136 66.9
SEGI_09644 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 4.7e-47 191.8 133 69.9
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 6.2e-47 191.4 134 70.9
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 6.2e-47 191.4 139 69.1
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 8.0e-47 191.0 139 69.8
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 8.0e-47 191.0 183 56.3
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 8.0e-47 191.0 144 68.1
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 1.1e-46 190.7 133 69.2
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 1.8e-46 189.9 136 71.3
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 1.8e-46 189.9 136 68.4
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 1.8e-46 189.9 136 68.4
unitig_77.g31482 Utricularia gibba HOM05D005327 ORTHO05D006655 1.8e-46 189.9 136 68.4
QL11p009789 Quercus lobata HOM05D005327 ORTHO05D006655 2.3e-46 189.5 184 56.5
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 3.1e-46 189.1 133 65.4
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 3.1e-46 189.1 135 66.7
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 5.2e-46 188.3 185 53.5
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 5.2e-46 188.3 136 66.9
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 5.2e-46 188.3 136 66.2
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 6.8e-46 188.0 133 66.2
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 6.8e-46 188.0 136 67.6
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 8.9e-46 187.6 136 69.9
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 8.9e-46 187.6 136 66.9
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 8.9e-46 187.6 136 66.9
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 8.9e-46 187.6 136 66.2
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 1.2e-45 187.2 179 54.2
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 1.5e-45 186.8 133 67.7
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 1.5e-45 186.8 136 67.6
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 2.0e-45 186.4 136 66.2
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 2.6e-45 186.0 133 67.7
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 2.6e-45 186.0 136 66.9
Sed0024331 Sechium edule HOM05D005327 ORTHO05D006655 2.6e-45 186.0 136 64.7
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 3.4e-45 185.7 133 65.4
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 3.4e-45 185.7 136 68.4
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 4.4e-45 185.3 136 67.6
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 4.4e-45 185.3 136 67.6
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 4.4e-45 185.3 136 66.9
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 5.8e-45 184.9 129 69.0
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 5.8e-45 184.9 133 67.7
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 7.5e-45 184.5 133 66.9
TPR.G25461 Trifolium pratense HOM05D005327 ORTHO05D006655 9.8e-45 184.1 133 67.7
Lj5A713T18 Lonicera japonica HOM05D005327 ORTHO05D006655 1.3e-44 183.7 136 65.4
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 1.3e-44 183.7 133 66.9
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 1.7e-44 183.3 151 62.3
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 3.7e-44 182.2 166 57.2
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 4.9e-44 181.8 133 66.9
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 8.3e-44 181.0 136 64.0
Zm00001eb071360 Zea mays HOM05D005327 ORTHO05D006655 1.1e-43 180.6 135 66.7
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 1.9e-43 179.9 135 65.9
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 3.2e-43 179.1 135 63.0
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 4.1e-43 178.7 137 63.5
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 4.1e-43 178.7 178 51.7
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 1.6e-42 176.8 183 51.9
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 1.6e-42 176.8 133 64.7
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 1.6e-42 176.8 133 64.7
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 1.6e-42 176.8 133 65.4
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 2.0e-42 176.4 136 63.2
Lj5A731T8 Lonicera japonica HOM05D005327 ORTHO05D006655 2.0e-42 176.4 136 63.2
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 2.0e-42 176.4 146 61.6
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 4.6e-42 175.3 183 51.4
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 4.6e-42 175.3 106 78.3
Gohir.A05G001766 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.0e-41 174.1 183 51.4
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 5.6e-40 168.3 113 69.0
Mapoly0128s0021 Marchantia polymorpha HOM05D005327 ORTHO05D006655 2.8e-39 166.0 185 47.6
SEGI_13698 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 6.2e-39 164.9 111 70.3
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 1.4e-38 163.7 111 71.2
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 4.0e-38 162.2 111 70.3
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 5.2e-38 161.8 111 69.4
BolC5t34395H Brassica oleracea HOM05D005327 ORTHO05D006655 5.2e-38 161.8 111 69.4
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 2.0e-37 159.8 112 67.0
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 2.6e-37 159.5 118 65.3
Pp3c23_15130 Physcomitrium patens HOM05D005327 ORTHO05D006655 9.9e-37 157.5 136 56.6
SMO356G0298 Selaginella moellendorffii HOM05D005327 ORTHO05D006655 1.2e-34 150.6 122 58.2
Solyc09g031880.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 1.2e-31 140.6 136 56.6
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 6.2e-31 138.3 135 53.3
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 4.1e-27 125.6 88 70.5
MCO11G047 Micromonas commoda HOM05D005327 ORTHO05D006655 4.3e-24 115.5 119 47.9
QL11p009727 Quercus lobata HOM05D005327 ORTHO05D006655 6.2e-23 111.7 80 67.5
A01p41940 Brassica napus HOM05D005327 ORTHO05D006655 1.8e-22 110.2 81 64.2
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 1.8e-14 83.6 54 72.2
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 5.3e-14 82.0 58 65.5
Gohir.D05G309350 Gossypium hirsutum HOM05D005327 ORTHO05D006655 9.9e-13 77.8 55 65.5
C03p49960 Brassica napus HOM05D005327 ORTHO05D006655 1.7e-12 77.0 44 77.3
Gorai.009G329700 Gossypium raimondii HOM05D005327 ORTHO05D006655 1.7e-12 77.0 55 65.5
Gohir.D09G007150 Gossypium hirsutum HOM05D005327 ORTHO05D006655 3.8e-12 75.9 55 63.6
C03p47280 Brassica napus HOM05D005327 ORTHO05D006655 1.1e-11 74.3 44 75.0
BcaC01g03662 Brassica carinata HOM05D005327 ORTHO05D006655 1.4e-11 73.9 44 75.0
BcaC01g03663 Brassica carinata HOM05D005327 ORTHO05D006655 1.4e-11 73.9 44 75.0
BolC3t17287H Brassica oleracea HOM05D005327 ORTHO05D006655 1.4e-11 73.9 44 75.0
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 2.5e-08 63.2 54 57.4
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 3.3e-08 62.8 136 34.6
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 5.6e-08 62.0 138 31.9
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 7.4e-08 61.6 46 56.5
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 2.1e-07 60.1 136 34.6
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 3.7e-07 59.3 136 33.1
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 3.7e-07 59.3 136 34.6
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 3.7e-07 59.3 143 32.9
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 4.8e-07 58.9 136 34.6
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 4.8e-07 58.9 136 34.6
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 4.8e-07 58.9 145 32.4
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 4.8e-07 58.9 134 33.6
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 4.8e-07 58.9 138 34.8
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 4.8e-07 58.9 136 35.3
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 4.8e-07 58.9 146 34.2
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 6.2e-07 58.5 134 34.3
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 8.1e-07 58.2 136 34.6
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 8.1e-07 58.2 142 31.0
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 8.1e-07 58.2 136 35.3
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.4e-06 57.4 136 34.6
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 1.4e-06 57.4 104 33.7
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 1.4e-06 57.4 105 33.3
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.8e-06 57.0 136 33.8
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 1.8e-06 57.0 136 33.1
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.8e-06 57.0 137 35.0
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 2.4e-06 56.6 137 33.6
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 2.4e-06 56.6 136 34.6
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 2.4e-06 56.6 134 32.1
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 3.1e-06 56.2 136 33.8
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 3.1e-06 56.2 136 33.8
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 3.1e-06 56.2 136 32.4
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 3.1e-06 56.2 137 32.8
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 3.1e-06 56.2 140 32.1
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 3.1e-06 56.2 136 33.1
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 4.0e-06 55.8 164 29.3
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 4.0e-06 55.8 142 33.8
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 4.0e-06 55.8 145 33.1
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 4.0e-06 55.8 100 37.0
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 4.0e-06 55.8 137 34.3
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 4.0e-06 55.8 146 31.5
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 9.0e-06 54.7 111 34.2
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 9.0e-06 54.7 134 32.1
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 9.0e-06 54.7 134 32.8
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 9.0e-06 54.7 134 33.6
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 9.0e-06 54.7 145 31.7
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 9.0e-06 54.7 136 33.1


User provided reference genes

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