Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.0e-108 396.7 202 100.0
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.7e-50 203.4 184 56.5
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 4.9e-50 201.8 189 55.0
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.9e-49 199.9 193 54.4
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 7.1e-49 198.0 189 53.4
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 9.2e-49 197.6 197 52.3
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.2e-48 197.2 190 53.7
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 4.6e-48 195.3 202 53.5
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.7e-47 193.4 177 56.5
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 1.7e-47 193.4 190 53.7
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.7e-47 193.4 180 56.1
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 3.9e-47 192.2 187 54.0
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 8.6e-47 191.0 195 50.8
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.1e-46 190.7 195 51.3
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.1e-46 190.7 184 53.3
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.5e-46 190.3 182 55.5
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.5e-46 190.3 186 53.8
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.9e-46 189.9 180 55.0
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 2.5e-46 189.5 189 54.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 4.3e-46 188.7 174 57.5
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 4.3e-46 188.7 184 53.3
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 5.6e-46 188.3 190 53.7
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 7.3e-46 188.0 190 52.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 9.6e-46 187.6 163 60.7
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 9.6e-46 187.6 180 55.0
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.2e-45 187.2 184 52.2
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.1e-45 186.4 186 54.3
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 2.8e-45 186.0 185 53.0
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.6e-45 185.7 157 58.6
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 3.6e-45 185.7 184 54.3
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 6.2e-45 184.9 164 59.8
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 8.1e-45 184.5 190 49.5
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 8.1e-45 184.5 199 49.7
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.1e-44 184.1 199 49.2
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.8e-44 183.3 182 50.5
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 3.1e-44 182.6 180 51.7
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.0e-44 182.2 199 50.8
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 5.2e-44 181.8 179 54.7
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 8.9e-44 181.0 159 59.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.2e-43 180.6 184 50.5
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.5e-43 180.3 185 50.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.5e-43 180.3 190 50.5
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.6e-43 179.5 161 56.5
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 3.4e-43 179.1 190 48.9
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.4e-43 179.1 173 55.5
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.4e-43 178.7 183 50.3
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 5.8e-43 178.3 161 55.9
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 5.8e-43 178.3 161 55.9
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 5.8e-43 178.3 161 55.9
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 7.6e-43 177.9 224 46.9
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 7.6e-43 177.9 185 52.4
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 9.9e-43 177.6 164 57.3
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 9.9e-43 177.6 182 52.7
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.3e-42 177.2 162 55.6
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.3e-42 177.2 179 52.0
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.3e-42 177.2 182 53.3
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.7e-42 176.8 179 52.0
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.7e-42 176.8 168 54.8
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 3.8e-42 175.6 174 51.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.9e-42 175.3 159 58.5
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 6.4e-42 174.9 186 52.7
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 8.4e-42 174.5 181 51.4
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 8.4e-42 174.5 174 52.3
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.1e-41 174.1 161 56.5
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 1.4e-41 173.7 174 54.0
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 4.2e-41 172.2 174 52.9
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 4.2e-41 172.2 223 44.4
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 4.2e-41 172.2 164 55.5
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 4.2e-41 172.2 131 63.4
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 4.2e-41 172.2 165 52.7
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 7.1e-41 171.4 174 54.6
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-40 170.6 179 52.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.1e-40 169.9 166 52.4
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.1e-40 169.9 190 49.5
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 4.6e-40 168.7 174 51.1
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 6.0e-40 168.3 174 51.1
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 6.0e-40 168.3 164 53.7
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 6.0e-40 168.3 164 53.7
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 7.8e-40 167.9 161 54.0
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 7.8e-40 167.9 164 53.7
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 7.8e-40 167.9 161 54.0
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.0e-39 167.5 178 49.4
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.0e-39 167.5 178 49.4
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.3e-39 167.2 162 53.7
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.3e-39 167.2 163 54.6
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 1.7e-39 166.8 177 52.5
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 2.3e-39 166.4 161 55.3
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 3.0e-39 166.0 194 47.4
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 3.9e-39 165.6 161 52.2
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.6e-39 164.9 161 55.3
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 8.7e-39 164.5 164 51.2
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 1.5e-38 163.7 189 45.5
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.5e-38 163.7 164 53.7
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 1.5e-38 163.7 154 52.6
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.9e-38 163.3 158 55.7
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 3.3e-38 162.5 169 51.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 4.3e-38 162.2 198 46.0
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 9.6e-38 161.0 134 61.9
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 9.6e-38 161.0 135 60.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 9.6e-38 161.0 179 49.7
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.3e-37 160.6 139 54.7
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.3e-37 160.6 160 55.6
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.3e-37 160.6 132 62.1
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.6e-37 160.2 142 54.9
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.6e-37 160.2 148 52.7
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.1e-37 159.8 192 46.9
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.1e-37 159.8 128 64.8
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 2.8e-37 159.5 136 57.4
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.8e-37 159.5 129 63.6
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.6e-37 159.1 148 53.4
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 8.1e-37 157.9 185 49.7
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.4e-36 157.1 129 61.2
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.4e-36 157.1 131 61.1
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.4e-36 157.1 135 60.7
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.4e-36 156.4 186 47.3
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.4e-36 156.4 215 43.7
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.0e-36 155.6 129 62.8
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 5.3e-36 155.2 137 56.2
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.3e-36 155.2 131 60.3
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 5.3e-36 155.2 136 57.4
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-35 154.1 129 62.0
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.2e-35 154.1 148 51.4
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 2.0e-35 153.3 129 59.7
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.0e-35 153.3 137 59.1
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 4.4e-35 152.1 120 64.2
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.7e-34 150.2 152 54.6
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-33 147.1 173 46.8
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.6e-32 143.7 135 51.1
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.3e-31 140.6 136 53.7
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.8e-29 132.9 106 62.3
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 3.1e-28 129.4 144 50.0
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.6e-27 126.3 123 50.4
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.7e-26 123.6 128 50.0
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 2.9e-26 122.9 129 48.1
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 4.9e-26 122.1 104 54.8
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.2e-25 119.4 143 45.5
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.8e-20 103.6 109 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.5e-19 100.5 79 55.7
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.9e-17 93.6 212 37.3
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 2.1e-16 90.1 191 35.1
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.5e-14 83.2 174 32.2
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 7.4e-14 81.6 105 47.6
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.4e-12 77.4 135 38.5
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 3.1e-12 76.3 187 35.3
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.3e-10 70.9 133 39.8
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 8.4e-10 68.2 112 42.0
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.7e-07 58.2 80 35.0
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.5e-06 57.4 134 32.1
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.3e-06 55.8 101 33.7


User provided reference genes

Program Settings