Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 8.1e-56 220.3 123 100.0
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 6.5e-29 131.0 122 56.6
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 6.5e-29 131.0 122 56.6
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 6.5e-29 131.0 122 56.6
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 8.4e-29 130.6 122 55.7
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 2.5e-28 129.0 109 59.6
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 4.2e-28 128.3 112 59.8
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 2.1e-27 125.9 123 56.9
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 6.0e-27 124.4 112 58.0
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 6.0e-27 124.4 110 60.0
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 1.3e-26 123.2 112 57.1
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 1.8e-26 122.9 111 58.6
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.8e-26 122.9 112 57.1
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 1.8e-26 122.9 110 56.4
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 1.8e-26 122.9 110 59.1
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 2.3e-26 122.5 111 58.6
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 3.9e-26 121.7 112 56.2
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 3.9e-26 121.7 122 52.5
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 6.7e-26 120.9 120 54.2
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 6.7e-26 120.9 108 57.4
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 6.7e-26 120.9 111 55.9
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 6.7e-26 120.9 111 55.9
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 8.7e-26 120.6 110 55.5
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 8.7e-26 120.6 110 56.4
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.1e-25 120.2 112 55.4
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.5e-25 119.8 110 57.3
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.5e-25 119.8 110 57.3
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 1.5e-25 119.8 112 58.0
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.5e-25 119.8 107 57.9
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 2.5e-25 119.0 111 55.9
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 2.5e-25 119.0 107 56.1
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 2.5e-25 119.0 110 57.3
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 3.3e-25 118.6 117 53.8
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 3.3e-25 118.6 117 53.8
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 3.3e-25 118.6 117 53.8
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 3.3e-25 118.6 117 53.8
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 3.3e-25 118.6 111 57.7
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 7.4e-25 117.5 111 55.9
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 7.4e-25 117.5 112 55.4
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 7.4e-25 117.5 121 54.5
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 9.7e-25 117.1 114 54.4
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 1.3e-24 116.7 124 51.6
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 1.3e-24 116.7 110 55.5
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 1.3e-24 116.7 112 54.5
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 1.6e-24 116.3 112 56.2
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.6e-24 116.3 110 56.4
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 1.6e-24 116.3 112 54.5
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.6e-24 116.3 113 58.4
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 1.6e-24 116.3 113 58.4
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 2.2e-24 115.9 117 52.1
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 2.2e-24 115.9 112 55.4
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 2.8e-24 115.5 122 51.6
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 3.7e-24 115.2 118 53.4
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 3.7e-24 115.2 118 53.4
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 3.7e-24 115.2 110 54.5
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.7e-24 115.2 110 54.5
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.7e-24 115.2 110 54.5
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.7e-24 115.2 110 54.5
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.7e-24 115.2 110 54.5
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 4.8e-24 114.8 107 56.1
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 4.8e-24 114.8 107 56.1
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 6.3e-24 114.4 110 54.5
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 8.2e-24 114.0 112 53.6
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 1.1e-23 113.6 94 61.7
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.4e-23 113.2 97 55.7
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 1.4e-23 113.2 96 57.3
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 1.4e-23 113.2 107 55.1
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 1.4e-23 113.2 109 53.2
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 1.8e-23 112.8 111 56.8
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.8e-23 112.8 108 57.4
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 1.8e-23 112.8 115 56.5
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 2.4e-23 112.5 113 55.8
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 2.4e-23 112.5 94 60.6
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 2.4e-23 112.5 94 67.0
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 3.1e-23 112.1 110 53.6
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 4.1e-23 111.7 111 55.0
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 4.1e-23 111.7 111 55.9
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 5.3e-23 111.3 109 55.0
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 5.3e-23 111.3 97 56.7
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 6.9e-23 110.9 97 54.6
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 6.9e-23 110.9 113 54.9
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 6.9e-23 110.9 111 52.3
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 9.0e-23 110.5 97 56.7
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 9.0e-23 110.5 112 55.4
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 1.2e-22 110.2 123 49.6
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.2e-22 110.2 114 52.6
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 1.2e-22 110.2 94 60.6
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 1.5e-22 109.8 112 52.7
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 2.0e-22 109.4 111 51.4
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 7.6e-22 107.5 106 53.8
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 1.0e-21 107.1 110 50.0
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.3e-21 106.7 98 56.1
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 1.7e-21 106.3 106 54.7
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 3.8e-21 105.1 111 50.5
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 5.0e-21 104.8 112 51.8
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 1.1e-20 103.6 90 60.0
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 4.2e-20 101.7 106 50.0
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 5.5e-20 101.3 111 46.8
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 7.2e-20 100.9 95 55.8
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 7.2e-20 100.9 93 53.8
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 1.2e-19 100.1 123 48.8
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 3.6e-19 98.6 111 50.5
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 4.6e-19 98.2 111 45.9
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 6.1e-19 97.8 123 47.2
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 3.0e-18 95.5 82 57.3
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 1.9e-17 92.8 112 46.4
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 2.2e-16 89.4 88 53.4
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 3.7e-16 88.6 97 51.5
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 8.2e-16 87.4 114 47.4
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 1.1e-15 87.0 97 50.5
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.6e-14 82.4 91 47.3
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.6e-14 82.4 91 47.3
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 3.8e-13 78.6 112 46.4
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 5.0e-13 78.2 117 42.7
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 5.0e-13 78.2 126 44.4
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 1.4e-12 76.6 122 36.9
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 3.2e-12 75.5 130 40.8
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 2.6e-06 55.8 84 36.9


User provided reference genes

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