Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.7e-45 185.7 92 100.0
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.1e-36 156.4 90 91.1
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.4e-36 155.2 92 89.1
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.0e-34 147.5 80 95.0
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.4e-22 107.8 64 90.6
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.3e-13 79.7 48 89.6
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 1.8e-12 75.9 61 65.6
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.0e-11 72.4 41 92.7
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 4.5e-11 71.2 48 72.9
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.0e-10 70.1 41 90.2
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 1.3e-10 69.7 49 73.5
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 2.3e-10 68.9 48 75.0
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 2.3e-10 68.9 46 76.1
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 2.9e-10 68.6 46 76.1
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 3.8e-10 68.2 46 73.9
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 3.8e-10 68.2 45 77.8
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 5.0e-10 67.8 45 77.8
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 6.6e-10 67.4 45 77.8
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 8.6e-10 67.0 44 79.5
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.1e-09 66.6 46 76.1
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.5e-09 66.2 45 73.3
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.9e-09 65.9 58 62.1
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.9e-09 65.9 44 77.3
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 2.5e-09 65.5 46 71.7
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 3.3e-09 65.1 57 66.7
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 4.3e-09 64.7 52 67.3
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 5.6e-09 64.3 48 66.7
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 5.6e-09 64.3 48 66.7
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 5.6e-09 64.3 41 78.0
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 7.3e-09 63.9 48 66.7
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 7.3e-09 63.9 47 74.5
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 7.3e-09 63.9 45 73.3
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 7.3e-09 63.9 41 80.5
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 9.5e-09 63.5 41 78.0
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.2e-08 63.2 48 68.8
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 1.2e-08 63.2 45 68.9
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.6e-08 62.8 48 66.7
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 2.1e-08 62.4 49 71.4
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 2.1e-08 62.4 47 68.1
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 2.1e-08 62.4 50 68.0
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 2.8e-08 62.0 41 75.6
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 2.8e-08 62.0 41 75.6
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 2.8e-08 62.0 41 75.6
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 2.8e-08 62.0 44 72.7
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 2.8e-08 62.0 44 72.7
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 3.6e-08 61.6 54 64.8
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 3.6e-08 61.6 48 62.5
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 4.7e-08 61.2 41 73.2
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 4.7e-08 61.2 47 66.0
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.7e-08 61.2 41 78.0
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 4.7e-08 61.2 45 75.6
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 6.1e-08 60.8 41 75.6
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 6.1e-08 60.8 44 68.2
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 8.0e-08 60.5 41 73.2
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 8.0e-08 60.5 41 73.2
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 8.0e-08 60.5 41 73.2
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 8.0e-08 60.5 41 75.6
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.0e-07 60.1 41 73.2
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 1.0e-07 60.1 41 73.2
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.0e-07 60.1 41 73.2
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 1.0e-07 60.1 41 73.2
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 1.0e-07 60.1 45 68.9
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 1.4e-07 59.7 44 70.5
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.4e-07 59.7 41 75.6
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 1.8e-07 59.3 41 70.7
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.8e-07 59.3 47 63.8
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.8e-07 59.3 41 73.2
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 4.0e-07 58.2 41 75.6
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 5.2e-07 57.8 47 66.0
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 5.2e-07 57.8 48 60.4
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 5.2e-07 57.8 40 72.5
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 6.8e-07 57.4 41 68.3
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 6.8e-07 57.4 45 66.7
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 8.9e-07 57.0 41 68.3
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 2.0e-06 55.8 89 43.8
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 2.0e-06 55.8 35 82.9
HanXRQChr01g0001301 Helianthus annuus HOM05D003821 ORTHO05D004449 3.4e-06 55.1 42 66.7
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 4.4e-06 54.7 34 79.4
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 7.5e-06 53.9 41 65.9


User provided reference genes

Program Settings