Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 3.7e-109 398.3 208 100.0
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 4.1e-108 394.8 208 99.0
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 5.3e-108 394.4 208 99.0
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 9.7e-94 347.1 208 86.5
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 1.2e-91 340.1 219 82.2
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 1.2e-88 330.1 213 82.2
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 4.4e-86 321.6 211 78.2
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 5.7e-86 321.2 207 78.3
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 2.2e-85 319.3 207 81.6
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 2.8e-85 318.9 208 80.8
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 5.9e-83 311.2 212 76.9
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 1.3e-82 310.1 206 78.6
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 1.7e-82 309.7 206 78.2
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 2.2e-82 309.3 208 78.4
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 8.5e-82 307.4 206 78.6
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 1.5e-81 306.6 209 77.5
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 1.9e-81 306.2 206 79.1
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 2.5e-81 305.8 235 71.1
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 4.2e-81 305.1 156 100.0
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 5.5e-81 304.7 208 75.5
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 3.6e-80 302.0 156 98.7
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 3.6e-80 302.0 208 76.0
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 1.0e-79 300.4 215 76.3
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 2.3e-79 299.3 206 76.2
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 2.3e-79 299.3 222 72.1
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 6.7e-79 297.7 211 75.4
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 1.2e-78 297.0 207 75.4
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.5e-78 296.6 196 76.5
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 1.5e-78 296.6 206 76.7
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 4.4e-78 295.0 230 69.1
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 9.7e-78 293.9 207 75.4
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 1.3e-77 293.5 212 73.1
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 1.7e-77 293.1 206 74.8
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 2.2e-77 292.7 214 73.8
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 3.7e-77 292.0 200 74.0
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 3.7e-77 292.0 216 72.2
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 4.8e-77 291.6 214 73.8
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 8.2e-77 290.8 214 73.8
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 1.1e-76 290.4 214 72.9
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 1.8e-76 289.7 216 72.2
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 3.1e-76 288.9 216 72.2
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 4.1e-76 288.5 213 72.8
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 5.3e-76 288.1 214 73.4
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 1.2e-75 287.0 213 73.2
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 2.7e-75 285.8 208 71.6
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 4.5e-75 285.0 213 73.2
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 4.5e-75 285.0 203 72.4
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 7.7e-75 284.3 220 68.6
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 7.7e-75 284.3 208 71.2
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 1.3e-74 283.5 156 91.0
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 1.7e-74 283.1 209 72.7
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 2.2e-74 282.7 195 74.9
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 2.9e-74 282.3 220 70.0
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 5.0e-74 281.6 217 69.6
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 3.2e-73 278.9 222 68.0
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 4.2e-73 278.5 156 91.7
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 7.2e-73 277.7 223 67.3
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 1.2e-72 276.9 208 69.2
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 1.2e-72 276.9 208 69.2
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 1.6e-72 276.6 210 68.6
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 1.6e-72 276.6 208 69.2
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.0e-71 273.9 149 94.0
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 1.8e-71 273.1 211 68.7
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.8e-71 273.1 205 69.8
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 2.3e-71 272.7 209 69.9
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 5.2e-71 271.6 185 73.5
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 8.8e-71 270.8 217 66.8
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 3.4e-70 268.9 285 56.8
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 5.7e-70 268.1 224 66.1
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 7.5e-70 267.7 185 72.4
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 2.4e-68 262.7 191 70.7
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 2.4e-68 262.7 207 65.2
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 5.4e-68 261.5 208 66.8
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 3.5e-67 258.8 170 80.6
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 5.9e-67 258.1 201 69.7
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 1.3e-66 256.9 207 63.3
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 2.3e-66 256.1 221 63.8
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 5.0e-66 255.0 180 70.0
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 8.6e-66 254.2 195 68.7
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 1.9e-65 253.1 195 68.2
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 1.9e-65 253.1 195 68.2
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 1.2e-62 243.8 152 80.9
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 1.2e-62 243.8 179 68.2
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.5e-62 243.4 215 64.2
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 5.7e-62 241.5 179 68.7
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 7.5e-62 241.1 214 62.1
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 4.1e-60 235.3 158 74.7
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 5.4e-60 235.0 152 80.9
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 7.0e-60 234.6 153 79.1
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 2.3e-58 229.6 208 62.5
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 5.0e-58 228.4 166 71.1
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 8.6e-58 227.6 150 74.7
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 1.9e-57 226.5 153 75.8
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 5.6e-57 224.9 211 61.1
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 1.6e-56 223.4 151 73.5
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 3.4e-54 215.7 160 66.9
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 8.3e-53 211.1 155 65.8
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 5.6e-49 198.4 183 55.7
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.8e-47 193.4 146 76.0
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 4.0e-47 192.2 122 80.3
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 6.8e-47 191.4 183 58.5
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 2.3e-42 176.4 197 55.3
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 3.3e-41 172.6 125 72.0
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 2.3e-39 166.4 203 45.3
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 4.9e-37 158.7 116 73.3
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 1.3e-34 150.6 90 82.2
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 1.9e-33 146.7 188 45.7
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 5.6e-33 145.2 179 46.9
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.3e-29 134.0 81 82.7
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 2.9e-29 132.9 79 83.5
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 4.6e-27 125.6 170 45.3
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.1e-25 120.9 80 75.0
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 6.2e-24 115.2 84 72.6
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 5.8e-22 108.6 72 76.4
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 9.9e-22 107.8 65 78.5
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 1.9e-20 103.6 99 59.6
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 1.6e-19 100.5 236 32.2
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 1.6e-16 90.5 83 66.3
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 3.1e-15 86.3 61 72.1
SHI21242 Sapria himalayana HOM05D006789 ORTHO05D008460 2.2e-13 80.1 94 51.1
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 2.7e-11 73.2 96 39.6
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.9e-09 67.0 66 48.5
MCO03G486 Micromonas commoda HOM05D006789 ORTHO05D008460 3.1e-07 59.7 229 28.4
Cfa010460 Carpinus fangiana HOM05D012552 ORTHO05D018926 9.9e-06 54.7 47 63.8


User provided reference genes

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