Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.N004900 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.0e-47 193.0 92 100.0
Gohir.A09G155700 Gossypium hirsutum HOM05D004046 ORTHO05D004716 2.8e-45 184.9 91 95.6
Gohir.D09G151200 Gossypium hirsutum HOM05D004046 ORTHO05D004716 2.8e-45 184.9 91 95.6
Gorai.006G172500 Gossypium raimondii HOM05D004046 ORTHO05D004716 2.8e-45 184.9 91 95.6
Duzib106G1933 Durio zibethinus HOM05D004046 ORTHO05D004716 4.8e-45 184.1 91 93.4
Gohir.D07G166050 Gossypium hirsutum HOM05D004046 ORTHO05D004716 8.2e-45 183.3 91 95.6
Thecc.05G038900 Theobroma cacao HOM05D004046 ORTHO05D004716 1.1e-44 183.0 91 93.4
COL.COLO4_14791 Corchorus olitorius HOM05D004046 ORTHO05D004716 1.4e-44 182.6 91 94.5
Eucgr.H04106 Eucalyptus grandis HOM05D004046 ORTHO05D004716 1.4e-44 182.6 91 93.4
QL03p017764 Quercus lobata HOM05D004046 ORTHO05D004716 5.3e-44 180.6 91 92.3
Gorai.003G067000 Gossypium raimondii HOM05D004046 ORTHO05D004716 6.9e-44 180.3 91 92.3
Gohir.D13G093250 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.2e-43 179.5 91 93.4
GSVIVG01031287001 Vitis vinifera HOM05D004046 ORTHO05D004716 1.2e-43 179.5 91 91.2
Ciclev10012951m.g Citrus clementina HOM05D004046 ORTHO05D004716 1.5e-43 179.1 91 91.2
Manes.09G093100 Manihot esculenta HOM05D004046 ORTHO05D004716 1.5e-43 179.1 91 91.2
TWI53G0737 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 1.5e-43 179.1 91 91.2
Gohir.D11G230500 Gossypium hirsutum HOM05D004046 ORTHO05D004716 2.0e-43 178.7 91 93.4
Potri.009G069800 Populus trichocarpa HOM05D004046 ORTHO05D004716 2.0e-43 178.7 91 91.2
Aqoxy3G03929 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 5.9e-43 177.2 91 89.0
Gohir.A11G326900 Gossypium hirsutum HOM05D004046 ORTHO05D004716 5.9e-43 177.2 91 91.2
Gorai.007G376100 Gossypium raimondii HOM05D004046 ORTHO05D004716 5.9e-43 177.2 91 91.2
Nn4g23875 Nelumbo nucifera HOM05D004046 ORTHO05D004716 5.9e-43 177.2 91 89.0
CiPaw.07G032600 Carya illinoinensis HOM05D004046 ORTHO05D004716 7.7e-43 176.8 91 90.1
PGR031G1682 Punica granatum HOM05D004046 ORTHO05D004716 7.7e-43 176.8 91 90.1
Lalb_Chr18g0054271 Lupinus albus HOM05D004046 ORTHO05D004716 1.3e-42 176.0 91 89.0
PSO541G2302 Papaver somniferum HOM05D004046 ORTHO05D004716 1.3e-42 176.0 91 87.9
PSO675G4097 Papaver somniferum HOM05D004046 ORTHO05D004716 1.3e-42 176.0 91 87.9
QL02p093330 Quercus lobata HOM05D004046 ORTHO05D004716 1.3e-42 176.0 91 90.1
arahy.Tifrunner.gnm1.ann1.9T0Q39 Arachis hypogaea HOM05D004046 ORTHO05D004716 1.7e-42 175.6 91 87.9
arahy.Tifrunner.gnm1.ann1.D04R4W Arachis hypogaea HOM05D004046 ORTHO05D004716 1.7e-42 175.6 91 87.9
MELO3C004163.2 Cucumis melo HOM05D004046 ORTHO05D004716 2.2e-42 175.3 91 87.9
CsaV3_2G007260 Cucumis sativus L. HOM05D000028 ORTHO05D004716 2.2e-42 175.3 91 87.9
PGR083G0204 Punica granatum HOM05D004046 ORTHO05D004716 2.2e-42 175.3 91 89.0
TWI74G0996 Tripterygium wilfordii HOM05D004046 ORTHO05D004716 2.2e-42 175.3 91 89.0
ATR0564G175 Amborella trichopoda HOM05D004046 ORTHO05D004716 2.9e-42 174.9 91 89.0
CiPaw.07G032200 Carya illinoinensis HOM05D004046 ORTHO05D004716 3.8e-42 174.5 91 89.0
PSO724G1081 Papaver somniferum HOM05D004046 ORTHO05D004716 3.8e-42 174.5 91 86.8
PSO729G0122 Papaver somniferum HOM05D004046 ORTHO05D004716 3.8e-42 174.5 91 86.8
THA.LOC104823263 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 3.8e-42 174.5 91 89.0
TAR362G0840 Trochodendron aralioides HOM05D004046 ORTHO05D004716 5.0e-42 174.1 91 87.9
Cpa.g.sc188.2 Carica papaya HOM05D004046 ORTHO05D004716 6.5e-42 173.7 91 87.9
THA.LOC104827016 Tarenaya hassleriana HOM05D004046 ORTHO05D004716 6.5e-42 173.7 91 89.0
ClCG02G014740 Citrullus lanatus HOM05D004046 ORTHO05D004716 8.5e-42 173.3 91 87.9
Dinv24482 Davidia involucrata HOM05D004046 ORTHO05D004716 8.5e-42 173.3 91 89.0
MD14G1013000 Malus domestica HOM05D004046 ORTHO05D004716 8.5e-42 173.3 91 87.9
Sed0010909 Sechium edule HOM05D004046 ORTHO05D004716 8.5e-42 173.3 91 86.8
Aqoxy3G02119 Aquilegia oxysepala HOM05D004046 ORTHO05D004716 1.1e-41 172.9 91 86.8
Hma1.2p1_0052F.1_g030600 Hydrangea macrophylla HOM05D004046 ORTHO05D004716 1.1e-41 172.9 91 86.8
Medtr8g103680 Medicago truncatula HOM05D004046 ORTHO05D004716 1.1e-41 172.9 91 87.9
Prupe.6G309100 Prunus persica HOM05D004046 ORTHO05D004716 1.1e-41 172.9 91 87.9
SGA_v2.0_scaffold4G01982 Striga asiatica HOM05D004046 ORTHO05D004716 1.1e-41 172.9 91 87.9
VMungo0540G2486 Vigna mungo HOM05D004046 ORTHO05D004716 1.1e-41 172.9 91 89.0
AUR62006779 Chenopodium quinoa HOM05D004046 ORTHO05D004716 1.4e-41 172.6 91 86.8
Haze_04031 Corylus avellana HOM05D004046 ORTHO05D004716 1.9e-41 172.2 91 87.9
Peaxi162Scf00357g00620 Petunia axillaris HOM05D004046 ORTHO05D004716 1.9e-41 172.2 91 86.8
MBI18_g27392_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 2.5e-41 171.8 91 85.7
Phvul.006G077300 Phaseolus vulgaris HOM05D004046 ORTHO05D004716 2.5e-41 171.8 91 87.9
EL10Ac4g09510 Beta vulgaris HOM05D004046 ORTHO05D004716 3.2e-41 171.4 91 86.8
CSS0016663 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 3.2e-41 171.4 91 86.8
CSS0022787 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 3.2e-41 171.4 91 86.8
CSS0043761 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 3.2e-41 171.4 91 86.8
CAN.G1076.45 Capsicum annuum HOM05D004046 ORTHO05D004716 3.2e-41 171.4 91 85.7
AUR62000434 Chenopodium quinoa HOM05D004046 ORTHO05D004716 3.2e-41 171.4 91 85.7
Dinv30922 Davidia involucrata HOM05D004046 ORTHO05D004716 3.2e-41 171.4 91 87.9
SalBow7G4079 Salvia bowleyana HOM05D004046 ORTHO05D004716 3.2e-41 171.4 91 86.8
Solyc01g100840.3 Solanum lycopersicum HOM05D004046 ORTHO05D004716 3.2e-41 171.4 91 85.7
Manes.08G080100 Manihot esculenta HOM05D004046 ORTHO05D004716 4.2e-41 171.0 91 86.8
unitig_699.g19663 Utricularia gibba HOM05D004046 ORTHO05D004716 4.2e-41 171.0 91 85.7
MBI19_g32693_MAGBIO Magnolia biondii HOM05D004046 ORTHO05D004716 5.5e-41 170.6 91 84.6
Ah.15g096470 Amaranthus hybridus HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 85.7
AL6G11540 Arabidopsis lyrata HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 85.7
AT5G02280 Arabidopsis thaliana HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 85.7
CARHR211090 Cardamine hirsuta HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 85.7
CiPaw.08G153400 Carya illinoinensis HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 87.9
Duzib093G2058 Durio zibethinus HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 89.0
Thhalv10015468m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 85.7
Thhalv10022901m.g Eutrema salsugineum HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 85.7
Sp6g40170 Schrenkiella parvula HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 85.7
Hund21854 Selenicereus undatus HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 85.7
Sopen01g044340 Solanum pennellii HOM05D004046 ORTHO05D004716 7.2e-41 170.2 91 85.7
MSTRG.16415 Avicennia marina HOM05D004046 ORTHO05D004716 9.4e-41 169.9 91 85.7
FvH4_6g08030 Fragaria vesca HOM05D004046 ORTHO05D004716 9.4e-41 169.9 91 86.8
FAN02G0090 Fragaria x ananassa HOM05D004046 ORTHO05D004716 9.4e-41 169.9 91 86.8
FAN05G0549 Fragaria x ananassa HOM05D004046 ORTHO05D004716 9.4e-41 169.9 91 86.8
Rhsim11G0098900 Rhododendron simsii HOM05D004046 ORTHO05D004716 9.4e-41 169.9 91 86.8
BcaB01g06156 Brassica carinata HOM05D004046 ORTHO05D004716 1.2e-40 169.5 91 85.7
A03p00610 Brassica napus HOM05D004046 ORTHO05D004716 1.2e-40 169.5 91 85.7
C03p00880 Brassica napus HOM05D004046 ORTHO05D004716 1.2e-40 169.5 91 85.7
Cfa006729 Carpinus fangiana HOM05D004046 ORTHO05D004716 1.2e-40 169.5 91 86.8
ECA236G0372 Erigeron canadensis HOM05D004046 ORTHO05D004716 1.2e-40 169.5 91 86.8
RcHm_v2.0_Chr3g0457701 Rosa chinensis HOM05D004046 ORTHO05D004716 1.2e-40 169.5 91 85.7
PGSC0003DMG400002754 Solanum tuberosum HOM05D004046 ORTHO05D004716 1.2e-40 169.5 91 84.6
Aa31LG1G22470 Aethionema arabicum HOM05D004046 ORTHO05D004716 1.6e-40 169.1 91 85.7
A10p33340 Brassica napus HOM05D004046 ORTHO05D004716 1.6e-40 169.1 91 84.6
C09p74250 Brassica napus HOM05D004046 ORTHO05D004716 1.6e-40 169.1 91 84.6
BolC9t60158H Brassica oleracea HOM05D004046 ORTHO05D004716 1.6e-40 169.1 91 84.6
BraA10t45365Z Brassica rapa HOM05D004046 ORTHO05D004716 1.6e-40 169.1 91 84.6
Carub.0006s0112 Capsella rubella HOM05D004046 ORTHO05D004716 1.6e-40 169.1 91 84.6
Glyma.18G053900 Glycine max HOM05D004046 ORTHO05D004716 1.6e-40 169.1 91 86.8
EL10Ac1g01013 Beta vulgaris HOM05D004046 ORTHO05D004716 2.1e-40 168.7 91 85.7
CDE08G1157 Ceratophyllum demersum HOM05D004046 ORTHO05D004716 2.1e-40 168.7 91 85.7
FAN14G5596 Fragaria x ananassa HOM05D004046 ORTHO05D004716 2.1e-40 168.7 91 86.8
Sc09g0002540 Simmondsia chinensis HOM05D004046 ORTHO05D004716 2.1e-40 168.7 91 84.6
CANSAT54G1174 Cannabis sativa HOM05D004046 ORTHO05D004716 2.7e-40 168.3 91 86.8
CDE02G1414 Ceratophyllum demersum HOM05D004046 ORTHO05D004716 2.7e-40 168.3 91 85.7
Glyma.09G274900 Glycine max HOM05D004046 ORTHO05D004716 2.7e-40 168.3 91 85.7
Medtr5g075330 Medicago truncatula HOM05D004046 ORTHO05D004716 2.7e-40 168.3 91 84.6
Actinidia16884 Actinidia chinensis HOM05D004046 ORTHO05D004716 3.6e-40 167.9 91 85.7
Lj3g0003008 Lotus japonicus HOM05D004046 ORTHO05D004716 3.6e-40 167.9 91 85.7
Nitab4.5_0003044g0050 Nicotiana tabacum HOM05D004046 ORTHO05D004716 3.6e-40 167.9 91 83.5
Nitab4.5_0011298g0030 Nicotiana tabacum HOM05D004046 ORTHO05D004716 3.6e-40 167.9 91 83.5
TPR.G22016 Trifolium pratense HOM05D004046 ORTHO05D004716 3.6e-40 167.9 91 83.5
BcaB01g06221 Brassica carinata HOM05D004046 ORTHO05D004716 4.7e-40 167.5 91 83.5
DCAR_003336 Daucus carota HOM05D004046 ORTHO05D004716 4.7e-40 167.5 91 85.7
Glyma.11G160100 Glycine max HOM05D004046 ORTHO05D004716 4.7e-40 167.5 91 85.7
Lsat_1_v5_gn_4_12481 Lactuca sativa HOM05D004046 ORTHO05D004716 4.7e-40 167.5 91 85.7
TPR.G18674 Trifolium pratense HOM05D004046 ORTHO05D004716 4.7e-40 167.5 91 83.5
Cc02_g35390 Coffea canephora HOM05D004046 ORTHO05D004716 6.1e-40 167.2 91 85.7
HanXRQChr05g0144301 Helianthus annuus HOM05D004046 ORTHO05D004716 6.1e-40 167.2 91 86.8
HanXRQChr14g0432401 Helianthus annuus HOM05D004046 ORTHO05D004716 6.1e-40 167.2 91 86.8
Sabra09G0052700 Salix brachista HOM05D004046 ORTHO05D004716 1.0e-39 166.4 106 77.4
Psat2g051160 Pisum sativum HOM05D000114 ORTHO05D000075 1.4e-39 166.0 91 83.5
MD12G1203200 Malus domestica HOM05D004046 ORTHO05D004716 1.8e-39 165.6 91 84.6
MSTRG.19613 Avicennia marina HOM05D004046 ORTHO05D004716 2.3e-39 165.2 91 82.4
Ca_05705_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 2.3e-39 165.2 91 82.4
Ca_30743_v3 Cicer arietinum L. HOM05D004046 ORTHO05D004716 2.3e-39 165.2 91 82.4
Lj6g0018597 Lotus japonicus HOM05D004046 ORTHO05D004716 2.3e-39 165.2 91 83.5
SEGI_05351 Sequoiadendron giganteum HOM05D004046 ORTHO05D004716 3.9e-39 164.5 91 84.6
Zm00001eb376880 Zea mays HOM05D004046 ORTHO05D004716 1.1e-38 162.9 91 81.3
AagrBONN_evm.TU.Sc2ySwM_228.3974 Anthoceros agrestis HOM05D004046 ORTHO05D004716 1.5e-38 162.5 91 81.3
Migut.B00856 Erythranthe guttata HOM05D004046 ORTHO05D004716 1.5e-38 162.5 91 82.4
Gorai.010G140600 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.5e-38 162.5 117 71.8
DCAR_022168 Daucus carota HOM05D004046 ORTHO05D004716 4.4e-38 161.0 91 81.3
DCAR_022169 Daucus carota HOM05D004046 ORTHO05D004716 4.4e-38 161.0 91 81.3
Nitab4.5_0022238g0010 Nicotiana tabacum HOM05D004046 ORTHO05D004716 5.7e-38 160.6 91 83.5
Oeu024971.3 Olea europaea HOM05D004046 ORTHO05D004716 9.7e-38 159.8 109 71.6
Os07g0454700 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 1.3e-37 159.5 90 80.0
CSS0015916 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 1.7e-37 159.1 91 82.4
Os06g0151300 Oryza sativa ssp. japonica HOM05D004046 ORTHO05D004716 1.7e-37 159.1 90 80.0
Peaxi162Scf00672g00088 Petunia axillaris HOM05D004046 ORTHO05D004716 6.3e-37 157.1 91 80.2
Pp3c15_20530 Physcomitrium patens HOM05D004046 ORTHO05D004716 5.9e-35 150.6 91 72.5
SMO270G0009 Selaginella moellendorffii HOM05D004046 ORTHO05D004716 5.9e-35 150.6 91 76.9
Mapoly0130s0031 Marchantia polymorpha HOM05D004046 ORTHO05D004716 1.0e-34 149.8 91 75.8
Pp3c9_17970 Physcomitrium patens HOM05D004046 ORTHO05D004716 9.4e-33 143.3 93 71.0
Gorai.004G096700 Gossypium raimondii HOM05D004046 ORTHO05D004716 2.1e-32 142.1 70 94.3
CBR_g30870 Chara braunii HOM05D004046 ORTHO05D004716 2.6e-30 135.2 91 65.9
Cre02.g077500 Chlamydomonas reinhardtii HOM05D004046 ORTHO05D004716 7.5e-30 133.7 91 65.9
vmacro01590 Vaccinium macrocarpon HOM05D004046 ORTHO05D004716 6.3e-29 130.6 184 42.9
Actinidia27689 Actinidia chinensis HOM05D004046 ORTHO05D004716 9.1e-28 126.7 69 85.5
Gorai.007G198600 Gossypium raimondii HOM05D004046 ORTHO05D004716 2.0e-27 125.6 91 71.4
PRCOL_00000225 Prasinoderma coloniale HOM05D004046 ORTHO05D004716 1.4e-23 112.8 93 54.8
Gohir.D11G186701 Gossypium hirsutum HOM05D004046 ORTHO05D004716 3.0e-23 111.7 91 64.8
Nn6g34665 Nelumbo nucifera HOM05D004046 ORTHO05D004716 1.3e-18 96.3 49 91.8
HanXRQChr12g0382401 Helianthus annuus HOM05D004046 ORTHO05D004716 2.2e-18 95.5 56 80.4
Gohir.A10G132500 Gossypium hirsutum HOM05D004046 ORTHO05D004716 6.5e-18 94.0 86 60.5
HanXRQChr01g0011571 Helianthus annuus HOM05D004046 ORTHO05D004716 6.5e-18 94.0 50 86.0
Gohir.A05G345101 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.6e-16 89.4 42 95.2
Gohir.A11G126151 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.6e-16 89.4 42 95.2
Gohir.A11G213700 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.6e-16 89.4 42 95.2
Gohir.D12G239250 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.6e-16 89.4 43 93.0
Gohir.D05G370366 Gossypium hirsutum HOM05D004046 ORTHO05D004716 6.1e-16 87.4 44 88.6
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 8.0e-16 87.0 114 44.7
Gorai.013G182400 Gossypium raimondii HOM05D004046 ORTHO05D004716 1.2e-14 83.2 41 90.2
Gorai.010G151900 Gossypium raimondii HOM05D004046 ORTHO05D004716 4.4e-14 81.3 39 92.3
CSS0046633 Camellia sinensis var. sinensis HOM05D004046 ORTHO05D004716 9.8e-14 80.1 49 75.5
Gohir.D10G086816 Gossypium hirsutum HOM05D004046 ORTHO05D003157 5.4e-12 74.3 36 91.7
CiPaw.07G032000 Carya illinoinensis HOM05D004046 ORTHO05D004716 9.2e-12 73.6 41 78.0
RcHm_v2.0_Chr4g0392831 Rosa chinensis HOM05D004046 ORTHO05D004716 5.0e-10 67.8 37 78.4
RcHm_v2.0_Chr2g0112131 Rosa chinensis HOM05D004046 ORTHO05D004716 7.3e-09 63.9 37 73.0
RcHm_v2.0_Chr4g0436621 Rosa chinensis HOM05D004046 ORTHO05D004716 2.1e-08 62.4 36 72.2
Gohir.D03G049466 Gossypium hirsutum HOM05D004046 ORTHO05D004716 1.8e-07 59.3 28 96.4
Gohir.D06G130050 Gossypium hirsutum HOM05D004046 ORTHO05D004716 5.2e-07 57.8 28 92.9
GSVIVG01028813001 Vitis vinifera HOM05D005130 ORTHO05D006185 9.8e-06 53.5 66 39.4


User provided reference genes

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