Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.0e-124 450.3 256 100.0
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 4.9e-79 298.5 295 65.1
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.4e-78 297.0 295 64.7
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.7e-76 290.0 295 62.7
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 8.3e-71 271.2 289 63.3
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 7.0e-70 268.1 296 63.2
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 6.0e-69 265.0 305 55.7
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.2e-66 257.3 301 53.8
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 8.1e-66 254.6 299 54.5
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 6.8e-65 251.5 288 60.8
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 9.9e-64 247.7 293 61.1
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.5e-61 239.2 295 53.9
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 8.6e-60 234.6 286 56.6
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.1e-59 234.2 288 53.5
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 9.5e-59 231.1 275 56.0
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.1e-57 227.6 289 51.9
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.8e-57 226.9 294 51.0
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.8e-57 226.9 296 52.0
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.4e-57 226.5 300 49.3
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.0e-57 225.7 290 54.1
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.0e-57 225.7 290 54.1
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 7.6e-56 221.5 297 53.2
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 9.9e-56 221.1 299 50.8
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 2.2e-55 219.9 293 52.2
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.4e-55 218.4 309 52.8
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 8.4e-55 218.0 303 51.8
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.4e-54 217.2 300 53.0
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.9e-54 216.9 293 53.6
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 3.2e-54 216.1 280 50.7
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 4.2e-54 215.7 290 54.5
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.2e-54 215.7 308 44.8
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 9.2e-54 214.5 309 45.6
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 9.2e-54 214.5 290 56.2
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.6e-53 213.8 293 51.5
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 2.1e-53 213.4 299 52.2
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 2.1e-53 213.4 297 51.2
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 7.8e-53 211.5 287 49.8
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.0e-52 211.1 288 53.8
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.0e-52 211.1 307 49.8
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 2.3e-52 209.9 296 53.0
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.0e-52 209.5 297 48.8
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.5e-51 207.2 286 47.6
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.9e-51 206.8 302 51.0
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.5e-51 206.5 291 53.6
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 9.6e-51 204.5 274 50.7
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 9.6e-51 204.5 299 46.8
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.1e-50 203.4 295 48.1
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 3.6e-50 202.6 315 48.6
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 4.7e-50 202.2 299 52.2
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 8.1e-50 201.4 296 50.7
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.1e-49 201.1 304 51.6
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.8e-49 200.3 295 47.5
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.0e-49 199.1 287 47.0
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 5.3e-49 198.7 295 52.2
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.5e-48 197.2 313 42.2
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 2.0e-48 196.8 294 50.3
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.6e-48 196.4 292 51.0
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.6e-48 196.4 298 46.0
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.4e-48 196.1 302 47.0
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 5.8e-48 195.3 319 48.9
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 5.8e-48 195.3 292 50.7
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 5.8e-48 195.3 292 50.7
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 7.6e-48 194.9 296 43.9
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 7.6e-48 194.9 283 50.9
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.3e-47 194.1 302 48.0
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 2.2e-47 193.4 299 44.8
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 3.8e-47 192.6 291 52.6
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 4.9e-47 192.2 292 50.3
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 8.4e-47 191.4 302 48.7
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 1.1e-46 191.0 292 48.3
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.1e-46 191.0 302 49.3
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.9e-46 190.3 331 42.6
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 3.2e-46 189.5 246 51.6
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 3.2e-46 189.5 279 51.3
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 3.2e-46 189.5 279 51.3
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.2e-46 189.1 317 43.2
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.4e-46 188.7 305 44.3
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 7.1e-46 188.3 298 50.0
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 9.3e-46 188.0 298 51.3
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 9.3e-46 188.0 298 51.3
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 9.3e-46 188.0 287 48.1
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 2.1e-45 186.8 274 44.9
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.1e-45 186.8 294 50.3
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.5e-45 186.0 299 45.2
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 7.8e-45 184.9 287 47.0
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 7.8e-45 184.9 303 44.6
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 7.8e-45 184.9 303 48.5
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 7.8e-45 184.9 276 49.6
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 3.9e-44 182.6 313 48.6
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 6.6e-44 181.8 303 40.9
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.1e-43 181.0 286 48.6
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 1.5e-43 180.6 275 53.8
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.5e-43 180.6 314 42.7
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.9e-43 180.3 298 51.3
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 4.3e-43 179.1 304 46.1
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 4.3e-43 179.1 305 45.9
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 7.3e-43 178.3 307 46.9
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.3e-42 177.6 308 45.8
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 2.1e-42 176.8 294 51.0
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 2.8e-42 176.4 300 46.0
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 4.8e-42 175.6 287 51.2
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 8.1e-42 174.9 289 51.2
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 1.8e-41 173.7 339 43.1
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 3.1e-41 172.9 307 48.2
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 3.1e-41 172.9 303 46.5
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 5.3e-41 172.2 289 47.4
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 6.9e-41 171.8 293 47.1
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 6.9e-41 171.8 296 50.3
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.5e-40 170.6 302 46.4
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.0e-40 170.2 305 45.6
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 3.4e-40 169.5 312 47.8
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 5.8e-40 168.7 299 47.8
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 5.8e-40 168.7 305 48.2
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 7.6e-40 168.3 295 46.8
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 9.9e-40 167.9 307 48.5
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.7e-39 167.2 302 46.4
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 3.8e-39 166.0 278 46.8
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.1e-38 164.5 397 39.8
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.9e-38 163.7 315 46.7
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.4e-38 163.3 286 45.8
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 2.4e-38 163.3 315 46.3
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.2e-37 161.0 306 49.3
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 1.6e-37 160.6 281 45.6
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.5e-37 159.5 99 81.8
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 6.0e-37 158.7 312 42.3
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 6.0e-37 158.7 304 47.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 5.1e-36 155.6 302 39.7
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 8.7e-36 154.8 271 43.9
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.5e-35 154.1 199 53.8
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.3e-34 151.0 287 44.3
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.6e-34 150.6 299 40.8
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.4e-33 146.7 261 46.0
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 2.6e-32 143.3 236 45.8
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 7.6e-32 141.7 264 41.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.7e-31 140.6 281 45.2
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.2e-31 140.2 278 41.0
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.9e-31 139.0 198 56.1
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 6.4e-31 138.7 188 50.0
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 3.2e-30 136.3 276 42.4
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.1e-29 133.7 282 37.9
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.0e-28 131.3 297 43.1
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.0e-28 131.3 172 54.7
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.0e-28 129.8 267 44.6
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.3e-27 126.3 305 37.4
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.6e-26 124.0 202 45.0
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.1e-26 123.6 319 32.9
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 6.2e-26 122.1 201 49.3
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 6.9e-25 118.6 84 73.8
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.5e-24 117.5 77 72.7
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.5e-24 117.5 128 45.3
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 6.5e-23 112.1 196 41.8
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 5.5e-22 109.0 212 46.7
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 9.3e-22 108.2 203 52.7
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.1e-21 107.1 77 62.3
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.8e-20 104.0 249 44.2
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 1.5e-19 100.9 237 43.5
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.9e-19 100.5 88 61.4
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 4.1e-17 92.8 128 43.0
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.5e-16 90.9 68 64.7
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 2.6e-16 90.1 75 56.0
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 7.7e-16 88.6 204 37.3
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.8e-15 86.3 63 66.7
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 1.1e-14 84.7 71 63.4
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.1e-14 84.7 71 63.4
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 5.5e-14 82.4 71 57.7
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.6e-13 80.9 195 37.4
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.8e-10 69.3 93 48.4
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.4e-09 67.8 294 31.3
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 2.4e-09 67.0 325 31.7
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.4e-09 67.0 92 45.7
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 4.1e-09 66.2 76 50.0
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.0e-07 61.6 123 39.8
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 2.9e-07 60.1 277 32.5
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 5.0e-07 59.3 83 42.2
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.5e-07 58.9 41 70.7


User provided reference genes

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