Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.3e-157 558.9 291 100.0
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 2.3e-157 558.9 291 100.0
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.3e-152 543.1 291 98.3
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.3e-125 453.4 295 83.4
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 3.9e-125 451.8 295 81.7
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 1.2e-118 430.3 297 79.1
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.1e-118 429.5 266 83.1
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 4.1e-106 388.7 297 71.7
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.3e-104 383.6 299 72.6
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 5.0e-104 381.7 302 72.8
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 1.0e-101 374.0 302 71.9
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 5.1e-101 371.7 310 67.4
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 9.1e-98 360.9 303 68.6
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.2e-96 356.3 285 69.8
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 3.9e-93 345.5 288 66.7
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.5e-92 343.6 302 65.9
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 4.4e-92 342.0 276 69.2
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 2.8e-91 339.3 300 67.3
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 4.8e-91 338.6 284 66.9
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.1e-90 337.4 296 67.9
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 1.1e-90 337.4 284 67.6
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 1.4e-90 337.0 302 65.6
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.4e-90 337.0 297 67.0
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.4e-90 336.3 287 66.6
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 2.4e-90 336.3 291 66.0
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 1.6e-89 333.6 320 61.2
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 5.9e-89 331.6 298 64.4
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 5.9e-89 331.6 297 66.0
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 2.5e-87 326.2 300 65.0
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 2.5e-87 326.2 260 69.2
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.2e-87 325.9 301 62.1
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.1e-86 323.2 297 63.3
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.1e-86 323.2 297 63.3
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 8.0e-86 321.2 283 65.7
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 1.0e-85 320.9 284 65.8
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.4e-85 320.5 298 63.1
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 3.0e-85 319.3 302 64.6
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 4.0e-85 318.9 302 62.3
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 4.0e-85 318.9 402 53.0
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 1.2e-84 317.4 297 62.0
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.6e-84 316.2 297 65.0
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 3.3e-84 315.8 302 62.6
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 4.4e-84 315.5 295 60.0
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 5.7e-84 315.1 297 64.3
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.2e-83 313.2 280 66.8
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 2.8e-83 312.8 292 64.7
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.1e-82 310.8 267 63.7
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 1.1e-82 310.8 303 61.1
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.4e-82 309.7 305 60.0
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 5.3e-82 308.5 297 59.9
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 1.2e-81 307.4 303 61.1
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 3.5e-81 305.8 293 63.1
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 7.7e-81 304.7 296 62.8
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 1.7e-80 303.5 290 60.7
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.2e-80 303.1 277 65.3
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 2.9e-80 302.8 295 60.0
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 5.0e-80 302.0 291 61.5
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 6.5e-80 301.6 296 62.5
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 6.5e-80 301.6 296 62.5
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 1.1e-79 300.8 310 61.0
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 1.1e-79 300.8 296 62.8
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.5e-79 300.4 314 56.7
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 4.2e-79 298.9 287 61.3
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 4.2e-79 298.9 277 62.8
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 9.4e-79 297.7 295 61.4
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 9.4e-79 297.7 293 59.4
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 1.2e-78 297.4 272 62.5
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 1.2e-78 297.4 260 66.5
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 1.6e-78 297.0 296 62.2
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 2.7e-78 296.2 297 60.9
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 2.7e-78 296.2 305 58.4
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 4.7e-78 295.4 290 59.3
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 8.0e-78 294.7 293 58.7
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 8.0e-78 294.7 250 65.6
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.0e-77 294.3 296 61.5
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 4.0e-77 292.4 307 56.4
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 8.8e-77 291.2 303 58.1
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.2e-76 290.8 300 62.3
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.5e-76 290.4 271 62.0
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 2.6e-76 289.7 312 61.5
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 4.4e-76 288.9 265 64.5
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.8e-74 283.5 305 58.7
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 3.1e-74 282.7 301 59.5
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 7.0e-74 281.6 305 58.0
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 9.1e-74 281.2 300 57.7
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 9.1e-74 281.2 276 60.5
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 2.7e-73 279.6 298 58.4
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 2.7e-73 279.6 306 59.2
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 2.7e-73 279.6 267 61.8
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 2.9e-72 276.2 304 58.6
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 8.6e-72 274.6 302 56.0
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-70 270.8 286 58.4
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 1.6e-70 270.4 295 58.0
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 1.5e-68 263.8 265 57.4
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 2.6e-68 263.1 288 58.0
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.7e-67 260.4 296 56.8
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.1e-66 257.7 296 56.1
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.1e-66 257.7 265 63.4
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.2e-65 254.2 273 56.8
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 2.9e-64 249.6 295 59.7
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 7.3e-63 245.0 306 55.2
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 1.2e-62 244.2 196 71.4
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.6e-62 243.8 295 55.3
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 8.0e-62 241.5 300 51.3
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 8.0e-62 241.5 243 60.5
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 8.0e-62 241.5 283 50.2
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-60 237.7 252 56.7
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 2.4e-58 229.9 299 53.8
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 9.2e-58 228.0 285 50.9
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 2.0e-57 226.9 302 50.7
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.7e-57 226.5 283 51.2
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 8.6e-56 221.5 293 50.5
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.9e-55 220.3 250 57.2
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 3.3e-55 219.5 303 52.1
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 7.3e-55 218.4 300 53.0
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.6e-54 217.2 297 52.5
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 5.8e-52 208.8 297 51.2
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 6.2e-46 188.7 295 45.4
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 8.1e-46 188.3 186 62.9
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 3.1e-45 186.4 233 53.2
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 1.5e-44 184.1 165 64.2
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 1.9e-42 177.2 249 47.4
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 2.4e-42 176.8 242 48.8
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 3.2e-42 176.4 178 63.5
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 5.4e-42 175.6 230 46.5
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 4.6e-41 172.6 249 46.6
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 3.9e-40 169.5 285 41.4
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 3.3e-39 166.4 250 46.4
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 5.2e-37 159.1 307 36.2
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.3e-32 143.7 286 38.1
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 5.3e-29 132.5 247 42.9
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-28 131.3 263 38.8
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.6e-28 130.2 228 45.2
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 7.6e-28 128.6 101 71.3
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 5.6e-23 112.5 190 42.1
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 2.8e-22 110.2 80 63.8
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 9.6e-15 85.1 75 58.7
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 6.2e-14 82.4 101 47.5
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.1e-13 80.1 73 68.5
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 4.0e-13 79.7 59 67.8
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 3.8e-11 73.2 118 44.1
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 8.4e-11 72.0 99 46.5
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 3.0e-08 63.5 143 39.2
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.1e-07 61.6 114 32.5
MBI13_g34035_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 6.2e-06 55.8 92 44.6


User provided reference genes

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