Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G241100 Gossypium raimondii HOM05D008155 ORTHO05D010411 1.7e-71 272.7 152 100.0
Gohir.A13G206400 Gossypium hirsutum HOM05D008155 ORTHO05D010411 2.3e-36 156.0 104 93.3
Thecc.05G331400 Theobroma cacao HOM05D008155 ORTHO05D010411 7.7e-24 114.4 113 53.1
COL.COLO4_05473 Corchorus olitorius HOM05D008155 ORTHO05D010411 2.0e-19 99.8 113 50.4
VMungo1383G2435 Vigna mungo HOM05D008155 ORTHO05D010411 4.3e-14 82.0 59 66.1
Solyc01g102460.4 Solanum lycopersicum HOM05D008155 ORTHO05D010411 1.6e-13 80.1 56 66.1
Sopen01g044900 Solanum pennellii HOM05D008155 ORTHO05D010411 1.6e-13 80.1 56 66.1
QL03p011396 Quercus lobata HOM05D008155 ORTHO05D010411 8.0e-13 77.8 100 42.0
Manes.08G106200 Manihot esculenta HOM05D008155 ORTHO05D010411 1.0e-12 77.4 47 72.3
TPR.G35721 Trifolium pratense HOM05D008155 ORTHO05D010411 1.0e-12 77.4 55 63.6
Cfa004403 Carpinus fangiana HOM05D008155 ORTHO05D010411 1.8e-12 76.6 54 70.4
Manes.09G182600 Manihot esculenta HOM05D008155 ORTHO05D010411 2.3e-12 76.3 56 60.7
Phvul.001G221000 Phaseolus vulgaris HOM05D008155 ORTHO05D010411 2.3e-12 76.3 47 66.0
Glyma.19G224100 Glycine max HOM05D008155 ORTHO05D010411 3.0e-12 75.9 49 67.3
Ciclev10029557m.g Citrus clementina HOM05D008155 ORTHO05D010411 1.5e-11 73.6 103 47.6
PGSC0003DMG400018233 Solanum tuberosum HOM05D008155 ORTHO05D010411 1.5e-11 73.6 46 67.4
Glyma.03G227200 Glycine max HOM05D008155 ORTHO05D010411 2.0e-11 73.2 48 66.7
Medtr7g111230 Medicago truncatula HOM05D008155 ORTHO05D010411 2.0e-11 73.2 52 61.5
CSS0011875 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 3.4e-11 72.4 99 41.4
SalBow8G5556 Salvia bowleyana HOM05D008155 ORTHO05D010411 4.4e-11 72.0 58 56.9
Haze_15003 Corylus avellana HOM05D008155 ORTHO05D010411 7.5e-11 71.2 54 66.7
Migut.N00987 Erythranthe guttata HOM05D008155 ORTHO05D010411 7.5e-11 71.2 50 64.0
CSS0018964 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 9.8e-11 70.9 57 59.6
Potri.005G001100 Populus trichocarpa HOM05D008155 ORTHO05D010411 1.7e-10 70.1 55 58.2
MSTRG.5176 Avicennia marina HOM05D008155 ORTHO05D010411 2.9e-10 69.3 87 42.5
RcHm_v2.0_Chr3g0459031 Rosa chinensis HOM05D008155 ORTHO05D010411 2.9e-10 69.3 98 37.8
MD04G1183800 Malus domestica HOM05D008155 ORTHO05D010411 3.7e-10 68.9 47 59.6
Hma1.2p1_0157F.1_g069510 Hydrangea macrophylla HOM05D008155 ORTHO05D010411 4.9e-10 68.6 55 58.2
Potri.013G000200 Populus trichocarpa HOM05D008155 ORTHO05D010411 6.4e-10 68.2 117 36.8
Prupe.6G302400 Prunus persica HOM05D008155 ORTHO05D010411 6.4e-10 68.2 104 37.5
arahy.Tifrunner.gnm1.ann1.QRZ24D Arachis hypogaea HOM05D008155 ORTHO05D010411 8.3e-10 67.8 58 58.6
FAN14G4286 Fragaria x ananassa HOM05D008155 ORTHO05D010411 8.3e-10 67.8 99 40.4
CANSAT54G1408 Cannabis sativa HOM05D008155 ORTHO05D010411 1.1e-09 67.4 46 65.2
SalBow4G1718 Salvia bowleyana HOM05D008155 ORTHO05D010411 1.1e-09 67.4 46 58.7
SalBow4G2153 Salvia bowleyana HOM05D008155 ORTHO05D010411 1.1e-09 67.4 46 58.7
TAR365G0599 Trochodendron aralioides HOM05D008155 ORTHO05D010411 1.1e-09 67.4 96 40.6
FAN02G1576 Fragaria x ananassa HOM05D008155 ORTHO05D010411 5.4e-09 65.1 99 39.4
MD12G1197100 Malus domestica HOM05D008155 ORTHO05D010411 5.4e-09 65.1 110 34.5
vmacro19804 Vaccinium macrocarpon HOM05D003050 ORTHO05D003513 9.2e-09 64.3 51 60.8
Nitab4.5_0006193g0010 Nicotiana tabacum HOM05D008155 ORTHO05D010411 1.2e-08 63.9 38 68.4
TWI56G0796 Tripterygium wilfordii HOM05D008155 ORTHO05D010411 1.2e-08 63.9 50 66.0
Atru.chr12.1507 Acer truncatum HOM05D008155 ORTHO05D010411 2.0e-08 63.2 47 59.6
Cpa.g.sc48.233 Carica papaya HOM05D008155 ORTHO05D010411 2.7e-08 62.8 48 58.3
Rhsim11G0107200 Rhododendron simsii HOM05D008155 ORTHO05D010411 3.5e-08 62.4 51 52.9
Oeu034763.2 Olea europaea HOM05D008155 ORTHO05D010411 4.6e-08 62.0 111 36.0
Atru.chr12.1502 Acer truncatum HOM05D008155 ORTHO05D010411 1.0e-07 60.8 47 57.4
TAR362G0658 Trochodendron aralioides HOM05D008155 ORTHO05D010411 1.0e-07 60.8 98 36.7
ClCG02G014570 Citrullus lanatus HOM05D008155 ORTHO05D010411 3.0e-07 59.3 50 60.0
unitig_699.g19831 Utricularia gibba HOM05D008155 ORTHO05D010411 3.0e-07 59.3 58 51.7
DCAR_022333 Daucus carota HOM05D008155 ORTHO05D010411 5.0e-07 58.5 52 50.0
Aa31LG11G10020 Aethionema arabicum HOM05D008255 ORTHO05D011943 8.6e-07 57.8 49 51.0
Sed0023159 Sechium edule HOM05D008155 ORTHO05D010411 1.1e-06 57.4 114 32.5
MELO3C004141.2 Cucumis melo HOM05D008155 ORTHO05D010411 1.5e-06 57.0 48 60.4
Sp2g21360 Schrenkiella parvula HOM05D008255 ORTHO05D011943 1.9e-06 56.6 57 50.9
Aqoxy7G02124 Aquilegia oxysepala HOM05D008155 ORTHO05D010411 2.5e-06 56.2 98 33.7
THA.LOC104802769 Tarenaya hassleriana HOM05D008255 ORTHO05D011943 2.5e-06 56.2 49 57.1
Ah.03g147790 Amaranthus hybridus HOM05D008155 ORTHO05D010411 4.3e-06 55.5 53 49.1
EL10Ac6g15313 Beta vulgaris HOM05D008155 ORTHO05D010411 4.3e-06 55.5 98 35.7
unitig_747.g21289 Utricularia gibba HOM05D008155 ORTHO05D010411 4.3e-06 55.5 49 53.1
AT5G26720 Arabidopsis thaliana HOM05D008255 ORTHO05D011943 5.6e-06 55.1 60 48.3
CsaV3_2G007430 Cucumis sativus L. HOM05D008155 ORTHO05D010411 7.3e-06 54.7 105 38.1
Sc03g0006010 Simmondsia chinensis HOM05D008155 ORTHO05D010411 7.3e-06 54.7 54 48.1


User provided reference genes

Program Settings