Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.0e-95 354.4 359 100.0
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.9e-77 292.4 375 83.7
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.9e-71 271.6 395 82.0
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 7.1e-60 235.3 127 89.0
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 3.5e-59 233.0 127 88.2
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.6e-54 216.9 123 86.2
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.7e-53 214.2 362 64.6
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 7.9e-51 205.3 124 79.8
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.8e-50 204.1 126 81.0
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.9e-49 200.7 126 80.2
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.6e-48 197.6 133 74.4
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 2.1e-48 197.2 129 75.2
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.8e-48 196.8 125 73.6
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 5.3e-47 192.6 118 77.1
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.5e-46 191.0 126 76.2
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.7e-45 187.6 130 71.5
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 4.9e-45 186.0 108 76.9
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 8.4e-45 185.3 126 73.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.1e-44 184.9 126 72.2
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.5e-44 183.7 102 80.4
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 3.2e-44 183.3 111 79.3
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 9.3e-44 181.8 110 76.4
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.7e-43 180.3 126 73.8
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.6e-43 179.5 123 74.0
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.6e-43 179.5 126 73.0
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.6e-43 179.5 118 74.6
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 6.0e-43 179.1 117 70.1
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.0e-43 179.1 126 73.0
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 7.9e-43 178.7 133 66.9
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.0e-42 176.8 126 72.2
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 3.9e-42 176.4 133 69.9
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 5.1e-42 176.0 122 71.3
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.5e-41 174.5 129 67.4
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 3.3e-41 173.3 112 74.1
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 7.4e-41 172.2 117 71.8
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 9.6e-41 171.8 137 62.8
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.3e-40 171.4 117 70.1
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.1e-40 170.6 140 60.0
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.8e-40 170.2 128 68.8
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.7e-40 169.9 118 69.5
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 6.2e-40 169.1 125 65.6
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.1e-39 168.3 125 64.8
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.4e-39 167.9 90 81.1
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.4e-39 167.2 122 69.7
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 6.9e-39 165.6 127 67.7
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 6.9e-39 165.6 127 63.8
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 9.0e-39 165.2 123 66.7
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 9.0e-39 165.2 123 66.7
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 2.0e-38 164.1 150 58.0
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.4e-38 163.3 128 64.1
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 5.8e-38 162.5 112 70.5
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 5.8e-38 162.5 112 67.9
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 5.8e-38 162.5 112 67.9
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 7.6e-38 162.2 130 60.8
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 7.6e-38 162.2 93 79.6
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.0e-37 161.8 112 70.5
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.3e-37 161.4 124 63.7
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-37 161.0 123 65.0
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.7e-37 161.0 123 65.0
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 2.2e-37 160.6 112 67.0
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.9e-37 160.2 108 69.4
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 3.8e-37 159.8 121 68.6
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 5.0e-37 159.5 98 78.6
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 6.5e-37 159.1 120 67.5
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.1e-36 158.3 128 63.3
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.9e-36 157.5 128 64.8
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 5.5e-36 156.0 128 61.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 5.5e-36 156.0 128 61.7
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.6e-35 154.5 96 76.0
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.1e-35 154.1 90 77.8
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.7e-35 153.7 119 68.1
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 2.7e-35 153.7 91 78.0
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 6.1e-35 152.5 121 65.3
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 1.3e-34 151.4 112 65.2
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 2.3e-34 150.6 112 64.3
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.0e-34 150.2 108 73.1
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 3.0e-34 150.2 128 61.7
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 3.9e-34 149.8 124 60.5
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 3.9e-34 149.8 103 69.9
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 5.1e-34 149.4 120 65.8
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 8.7e-34 148.7 92 76.1
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 1.1e-33 148.3 99 68.7
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.9e-33 147.5 99 73.7
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.3e-33 146.4 104 69.2
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 5.7e-33 146.0 113 62.8
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 9.7e-33 145.2 92 72.8
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 1.3e-32 144.8 121 63.6
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.6e-32 144.4 120 64.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.6e-32 144.4 89 76.4
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 2.2e-32 144.1 110 66.4
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 2.8e-32 143.7 119 59.7
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 2.0e-30 137.5 89 74.2
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.4e-30 136.7 100 68.0
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 4.5e-30 136.3 109 60.6
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 7.7e-30 135.6 92 67.4
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 5.0e-29 132.9 103 67.0
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 1.2e-27 128.3 89 70.8
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.7e-27 127.1 89 69.7
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.7e-27 127.1 82 80.5
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.7e-27 127.1 82 76.8
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 3.6e-27 126.7 125 57.6
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.0e-26 125.2 78 76.9
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.8e-26 124.4 84 73.8
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 1.3e-24 118.2 119 53.8
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.7e-24 117.9 82 74.4
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 5.3e-23 112.8 78 71.8
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.5e-22 111.3 69 78.3
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.4e-22 110.2 87 63.2
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 4.5e-22 109.8 144 45.8
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.0e-21 108.6 113 48.7
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 3.8e-21 106.7 97 59.8
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 5.0e-21 106.3 73 74.0
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 5.0e-21 106.3 104 50.0
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 8.5e-21 105.5 95 55.8
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.1e-20 105.1 102 55.9
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 1.1e-20 105.1 102 55.9
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 1.1e-20 105.1 62 79.0
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.4e-20 104.8 80 58.8
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 9.4e-20 102.1 110 51.8
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.6e-19 101.3 110 49.1
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.7e-19 100.5 69 75.4
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 4.7e-19 99.8 78 62.8
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 7.9e-19 99.0 117 48.7
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 1.0e-18 98.6 69 69.6
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.8e-18 97.8 115 49.6
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 8.8e-18 95.5 93 59.1
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.6e-17 94.0 92 53.3
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 7.4e-17 92.4 69 76.8
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.3e-16 91.7 80 50.0
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.2e-16 90.9 72 69.4
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 4.8e-16 89.7 124 49.2
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 8.2e-16 89.0 123 45.5
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 3.1e-15 87.0 51 86.3
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.3e-15 86.3 76 59.2
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 7.0e-15 85.9 91 47.3
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 9.1e-15 85.5 96 49.0
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.5e-14 84.7 65 70.8
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 3.5e-14 83.6 67 67.2
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 7.7e-14 82.4 99 43.4
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.2e-13 80.9 125 45.6
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.9e-13 80.5 97 46.4
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.1e-12 78.6 104 45.2
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.1e-12 78.6 99 51.5
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 4.2e-12 76.6 56 75.0
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 5.5e-12 76.3 111 43.2
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.2e-11 75.1 82 52.4
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.7e-11 73.9 42 83.3
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.7e-11 73.9 43 83.7
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 4.7e-11 73.2 97 43.3
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.0e-11 72.4 51 72.5
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 8.0e-11 72.4 57 68.4
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.4e-10 71.6 51 68.6
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 1.8e-10 71.2 59 57.6
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.8e-10 71.2 50 66.0
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.8e-10 71.2 133 42.1
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 2.3e-10 70.9 42 81.0
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.9e-10 70.1 51 76.5
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 6.7e-10 69.3 67 61.2
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 8.8e-10 68.9 105 40.0
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 8.8e-10 68.9 88 46.6
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 2.0e-09 67.8 100 45.0
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 2.6e-09 67.4 58 58.6
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 3.3e-09 67.0 78 51.3
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.3e-08 65.1 101 37.6
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 2.2e-08 64.3 37 81.1
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.8e-08 63.9 97 38.1
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 6.3e-08 62.8 37 78.4
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 1.8e-07 61.2 60 53.3
BNapus_Darmor_BZH_scaffold_38p01430 Brassica napus HOM05D003803 ORTHO05D004456 7.0e-07 59.3 46 54.3
Mapoly0073s0064 Marchantia polymorpha HOM05D002369 ORTHO05D002435 7.0e-07 59.3 118 36.4
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 2.0e-06 57.8 47 61.7
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 2.6e-06 57.4 90 35.6
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.9e-06 56.2 53 56.6


User provided reference genes

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