Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.0e-188 663.3 345 100.0
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.3e-188 662.1 345 99.7
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.3e-187 657.9 345 99.4
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 8.9e-177 623.6 345 92.8
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.8e-173 610.5 345 90.4
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.3e-172 609.0 345 90.1
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.6e-170 602.8 345 91.6
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 4.0e-161 571.6 344 84.0
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.5e-160 569.7 345 84.1
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 2.0e-160 569.3 345 82.0
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 2.6e-160 568.9 345 83.5
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 4.4e-160 568.2 345 83.5
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.2e-157 560.1 345 82.6
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 2.7e-157 558.9 345 82.3
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 3.5e-157 558.5 345 82.0
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.0e-156 557.0 345 80.9
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 1.1e-155 553.5 347 81.8
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.1e-155 553.5 345 81.7
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 9.6e-155 550.4 345 81.7
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 6.2e-154 547.7 345 80.9
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 6.2e-154 547.7 345 81.7
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 8.1e-154 547.4 345 80.9
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 8.1e-154 547.4 345 80.9
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 5.3e-153 544.7 346 78.6
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.2e-152 543.5 346 79.8
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 2.6e-152 542.3 345 80.3
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 3.4e-152 542.0 343 80.2
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 7.6e-152 540.8 345 80.6
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 3.8e-151 538.5 346 80.6
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 3.8e-151 538.5 343 79.3
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 6.4e-151 537.7 345 79.7
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 1.4e-150 536.6 350 78.9
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 4.2e-150 535.0 343 78.7
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 7.1e-150 534.3 343 78.4
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 9.3e-150 533.9 345 79.1
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 4.6e-149 531.6 348 78.7
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 6.0e-149 531.2 343 77.8
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 6.0e-149 531.2 343 78.1
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 7.9e-149 530.8 343 77.8
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 2.3e-148 529.3 345 76.5
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 2.3e-148 529.3 345 75.9
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 3.0e-148 528.9 343 77.8
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 5.1e-148 528.1 345 77.1
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 6.7e-148 527.7 337 81.9
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 1.1e-147 526.9 343 77.3
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.5e-147 525.8 343 77.3
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 4.3e-147 525.0 345 76.5
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 7.4e-147 524.2 343 75.5
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 9.6e-147 523.9 343 77.0
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 9.6e-147 523.9 343 77.0
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.6e-146 523.1 344 77.9
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.6e-146 523.1 346 77.2
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 2.8e-146 522.3 343 76.7
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 2.8e-146 522.3 343 76.7
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 2.8e-146 522.3 343 76.7
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 3.6e-146 521.9 355 75.2
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.1e-145 520.4 346 76.9
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 1.8e-145 519.6 355 75.5
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.2e-144 516.9 345 76.5
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.2e-144 516.9 341 76.5
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.5e-144 516.5 345 75.7
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.5e-144 516.5 345 75.9
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 3.4e-144 515.4 346 76.0
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 7.6e-144 514.2 345 76.5
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 3.8e-143 511.9 345 75.1
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 4.9e-143 511.5 345 74.8
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 6.4e-143 511.1 343 76.1
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 8.4e-143 510.8 345 74.5
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 1.4e-142 510.0 345 74.2
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.9e-142 509.6 347 76.7
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 5.5e-142 508.1 351 75.5
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 7.1e-142 507.7 345 76.2
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 1.6e-141 506.5 345 76.2
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.6e-141 506.5 415 66.7
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 1.6e-141 506.5 347 76.1
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 2.1e-141 506.1 367 71.9
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 2.1e-141 506.1 392 68.1
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 1.0e-140 503.8 345 73.9
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.3e-140 503.4 336 74.7
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.3e-140 502.7 345 75.4
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 2.5e-139 499.2 345 73.9
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.6e-138 496.5 358 73.2
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 2.1e-138 496.1 325 76.6
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 4.8e-138 495.0 347 75.2
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 5.3e-137 491.5 343 73.8
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.2e-136 490.3 345 74.5
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.7e-135 486.5 345 73.3
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 4.2e-134 481.9 308 78.2
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.1e-131 473.8 347 72.0
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 3.3e-131 472.2 272 87.1
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 5.7e-131 471.5 313 77.3
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 5.7e-131 471.5 344 70.9
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.8e-130 469.2 336 70.5
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 8.2e-130 467.6 308 77.6
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.3e-127 460.3 308 75.6
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.7e-127 459.9 335 70.7
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 5.5e-126 454.9 272 83.5
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 5.7e-123 444.9 345 68.7
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.3e-122 443.7 345 68.4
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 5.3e-121 438.3 418 58.9
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 1.7e-119 433.3 295 76.6
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 2.9e-119 432.6 343 65.3
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 6.5e-119 431.4 400 62.0
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.4e-118 430.3 345 66.1
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 6.7e-116 421.4 345 64.9
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 5.7e-115 418.3 292 73.3
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 1.4e-113 413.7 222 94.1
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 1.0e-111 407.5 328 68.3
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 2.0e-104 383.3 343 61.5
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 3.6e-101 372.5 224 82.1
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 7.5e-99 364.8 384 52.1
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.1e-97 359.0 206 89.3
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.3e-95 354.0 345 57.7
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 2.9e-95 352.8 246 72.8
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 2.5e-86 323.2 435 47.4
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 2.8e-85 319.7 344 53.8
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 8.6e-79 298.1 340 48.5
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 1.1e-78 297.7 249 61.4
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 5.6e-78 295.4 249 62.7
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 1.8e-76 290.4 200 74.0
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 8.9e-76 288.1 169 84.0
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 4.0e-68 262.7 255 56.1
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 4.1e-65 252.7 273 48.4
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 1.9e-57 227.3 165 72.7
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 8.6e-55 218.4 144 79.2
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 2.8e-53 213.4 238 53.8
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 2.0e-51 207.2 144 68.1
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 2.2e-50 203.8 192 57.3
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 1.1e-46 191.4 184 56.5
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.2e-45 188.0 131 74.8
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.7e-45 186.0 110 83.6
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.2e-43 181.4 330 36.1
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 2.1e-40 170.6 335 33.4
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.8e-40 168.7 95 89.5
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 7.3e-38 162.2 323 31.3
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.8e-36 157.5 132 64.4
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 6.9e-36 155.6 317 32.8
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 3.3e-30 136.7 113 66.4
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 1.4e-25 121.3 74 82.4
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 1.8e-23 114.4 106 59.4
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.7e-21 106.7 95 64.2
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 5.8e-19 99.4 73 67.1


User provided reference genes

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