Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 5.9e-115 418.3 361 100.0
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 5.2e-111 405.2 335 98.2
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 1.2e-86 324.3 334 83.5
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 7.1e-84 315.1 328 74.7
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 3.5e-83 312.8 334 78.1
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 7.8e-83 311.6 322 84.2
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 5.1e-82 308.9 328 73.5
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 8.7e-82 308.1 328 82.6
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 2.1e-80 303.5 323 84.2
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 4.8e-80 302.4 342 77.5
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 5.3e-79 298.9 335 79.4
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 2.0e-78 297.0 328 75.6
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.4e-78 296.2 328 75.3
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.5e-78 295.8 328 75.3
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 5.8e-78 295.4 331 79.8
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 9.9e-78 294.7 328 80.5
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 1.7e-77 293.9 333 76.0
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 1.4e-76 290.8 335 73.7
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 4.2e-76 289.3 332 76.5
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 1.5e-73 280.8 333 74.2
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.9e-73 280.4 334 80.2
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.9e-73 280.4 333 80.5
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 7.4e-73 278.5 336 70.5
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 1.3e-72 277.7 339 76.7
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 1.6e-72 277.3 324 78.1
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.4e-71 274.2 336 73.8
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 5.3e-71 272.3 324 79.9
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 9.0e-71 271.6 336 81.2
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.2e-70 271.2 324 79.6
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 1.5e-70 270.8 322 73.6
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.0e-70 270.4 324 79.6
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.6e-70 270.0 324 79.0
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.6e-70 270.0 330 75.8
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 3.4e-70 269.6 325 72.6
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 3.4e-70 269.6 325 72.6
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 4.5e-70 269.2 339 58.7
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 7.6e-70 268.5 324 79.6
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 7.6e-70 268.5 324 79.6
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 7.6e-70 268.5 324 79.6
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 7.6e-70 268.5 324 79.6
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 9.9e-70 268.1 323 80.8
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 1.3e-69 267.7 336 60.4
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 1.7e-69 267.3 327 73.7
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 2.9e-69 266.5 326 79.1
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 2.9e-69 266.5 325 81.8
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 4.9e-69 265.8 327 75.2
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 1.9e-68 263.8 324 78.7
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.9e-68 263.8 331 75.2
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 4.2e-68 262.7 330 78.5
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 9.3e-68 261.5 328 70.4
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.7e-67 260.0 324 78.1
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 2.7e-67 260.0 328 75.3
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.7e-67 260.0 343 77.3
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 6.0e-67 258.8 324 73.1
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 3.0e-66 256.5 338 74.9
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.9e-66 256.1 317 72.6
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 3.9e-66 256.1 326 69.3
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.5e-65 254.2 320 79.7
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.9e-65 253.8 325 72.0
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 2.5e-65 253.4 333 66.4
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 7.4e-65 251.9 325 77.2
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 1.3e-64 251.1 311 79.1
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 4.8e-64 249.2 329 76.0
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 6.2e-64 248.8 340 66.8
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 8.1e-64 248.4 333 73.0
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 9.0e-63 245.0 272 93.0
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 4.5e-62 242.7 348 71.0
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.0e-61 241.5 304 74.3
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 1.3e-61 241.1 342 66.4
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 1.3e-61 241.1 328 75.3
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 3.8e-61 239.6 322 75.2
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 4.9e-61 239.2 317 77.6
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 8.4e-61 238.4 311 68.2
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 1.4e-60 237.7 322 71.1
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 2.5e-60 236.9 315 77.1
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 5.5e-60 235.7 326 75.8
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 1.2e-59 234.6 348 71.3
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 3.5e-59 233.0 276 80.8
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.0e-58 231.5 316 75.0
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.3e-58 230.3 324 75.0
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 6.7e-58 228.8 327 67.9
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 6.7e-58 228.8 331 72.2
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 6.7e-58 228.8 317 75.1
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 6.7e-58 228.8 322 73.6
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 2.5e-57 226.9 335 73.7
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 7.4e-57 225.3 322 65.2
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 9.6e-57 224.9 304 74.0
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.6e-56 224.2 328 72.0
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 3.7e-56 223.0 326 73.3
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 8.2e-56 221.9 323 59.8
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 1.8e-55 220.7 319 68.3
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.4e-55 220.3 323 67.2
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 1.2e-54 218.0 337 62.6
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 1.2e-54 218.0 337 62.6
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 4.5e-54 216.1 317 56.5
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 3.8e-53 213.0 285 73.7
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 6.5e-53 212.2 338 67.2
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 6.5e-53 212.2 318 74.8
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.4e-52 211.1 290 73.8
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 1.9e-52 210.7 320 71.9
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 2.5e-52 210.3 324 68.8
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 2.5e-52 210.3 324 68.8
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 4.2e-52 209.5 340 64.7
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 5.5e-52 209.1 343 58.6
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 7.2e-52 208.8 318 66.7
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 9.3e-52 208.4 325 66.2
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 2.1e-51 207.2 321 72.0
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 2.7e-51 206.8 316 67.7
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 3.6e-51 206.5 329 70.8
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.8e-50 204.1 324 69.8
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 5.1e-50 202.6 326 71.5
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 6.7e-50 202.2 336 69.9
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 8.7e-50 201.8 326 65.6
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 1.5e-49 201.1 317 73.2
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 9.7e-49 198.4 324 69.4
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.3e-48 198.0 324 69.4
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 2.8e-48 196.8 339 66.4
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.7e-48 196.4 329 69.9
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 6.3e-48 195.7 294 72.4
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 6.3e-48 195.7 329 70.2
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 6.3e-48 195.7 318 71.7
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 6.3e-48 195.7 321 69.8
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 6.3e-48 195.7 316 68.7
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 6.3e-48 195.7 366 46.7
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.1e-47 194.9 332 68.4
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 1.1e-47 194.9 317 73.2
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 4.1e-47 193.0 331 70.1
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 5.3e-47 192.6 294 71.8
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 9.1e-47 191.8 326 71.5
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 9.1e-47 191.8 334 57.5
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.6e-46 190.3 322 64.0
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 3.4e-46 189.9 318 71.4
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 5.9e-46 189.1 332 69.0
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 5.9e-46 189.1 332 69.0
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 1.3e-45 188.0 332 69.3
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 1.3e-45 188.0 325 61.5
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 1.9e-44 184.1 306 73.5
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 2.5e-44 183.7 316 68.0
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 3.2e-44 183.3 321 62.0
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 4.2e-44 183.0 329 62.9
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 9.4e-44 181.8 250 82.8
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 9.4e-44 181.8 307 71.7
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 2.1e-43 180.6 163 66.9
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.7e-43 180.3 324 67.0
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 4.6e-43 179.5 320 70.6
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 6.1e-43 179.1 339 68.7
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 7.9e-43 178.7 319 69.6
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.8e-42 177.6 319 69.3
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 2.6e-38 163.7 318 61.9
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 4.5e-38 162.9 327 61.2
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 7.7e-38 162.2 310 43.9
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.3e-37 161.4 336 45.2
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.3e-37 161.4 318 67.3
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 1.7e-37 161.0 289 56.7
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 5.0e-37 159.5 318 63.2
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 5.0e-37 159.5 318 63.2
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 9.4e-36 155.2 326 59.2
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 1.2e-35 154.8 313 63.9
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.6e-35 154.5 316 62.3
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 7.9e-35 152.1 149 72.5
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 7.9e-35 152.1 149 72.5
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 8.8e-34 148.7 330 50.0
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 8.8e-34 148.7 149 71.8
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 1.3e-32 144.8 324 59.9
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 2.8e-32 143.7 324 59.6
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 3.7e-32 143.3 324 57.7
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.8e-31 141.0 324 60.2
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 1.6e-30 137.9 317 62.1
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.7e-29 134.4 167 67.1
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 2.9e-29 133.7 165 62.4
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 5.5e-28 129.4 325 44.0
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 5.2e-26 122.9 150 66.7
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 9.7e-25 118.6 88 71.6
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 1.7e-24 117.9 331 54.4
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 1.7e-24 117.9 331 54.4
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 1.7e-24 117.9 331 54.4
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 5.3e-23 112.8 156 56.4
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.7e-22 110.5 163 56.4
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 7.7e-22 109.0 149 65.1
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 1.3e-21 108.2 235 68.9
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 2.1e-19 100.9 83 65.1
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.8e-16 90.5 236 65.3
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 2.4e-15 87.4 116 64.7
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 1.7e-13 81.3 156 44.2
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 7.2e-12 75.9 329 53.5
BcaC08g43401 Brassica carinata HOM05D003453 ORTHO05D004154 8.0e-11 72.4 77 51.9
C06p07690 Brassica napus HOM05D003453 ORTHO05D004154 8.0e-11 72.4 77 51.9
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 4.4e-09 66.6 323 48.6


User provided reference genes

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