Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G210500 Gossypium raimondii HOM05D016823 ORTHO05D020811 1.5e-74 282.7 141 100.0
Gorai.012G090500 Gossypium raimondii HOM05D016823 ORTHO05D020811 7.9e-15 84.3 112 37.5
Gorai.003G078100 Gossypium raimondii HOM05D016823 ORTHO05D020811 3.5e-10 68.9 50 60.0
Gorai.012G074500 Gossypium raimondii HOM05D016823 ORTHO05D020811 1.3e-09 67.0 101 34.7
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-09 66.6 100 32.0
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-09 65.9 120 29.2
COL.COLO4_27635 Corchorus olitorius HOM05D000003 ORTHO05D000022 5.0e-09 65.1 97 33.0
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 6.5e-09 64.7 120 30.0
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 6.5e-09 64.7 113 34.5
arahy.Tifrunner.gnm1.ann1.I6PHI5 Arachis hypogaea HOM05D000003 ORTHO05D000022 1.1e-08 63.9 110 29.1
COL.COLO4_22677 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.5e-08 63.5 107 30.8
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.2e-08 62.4 113 34.5
SHI10451 Sapria himalayana HOM05D000155 ORTHO05D000022 3.2e-08 62.4 127 34.6
Atru.chr5.1996 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-08 62.0 121 28.9
Atru.chr6.1037 Acer truncatum HOM05D000003 ORTHO05D000022 4.2e-08 62.0 120 31.7
Lj4g0002379 Lotus japonicus HOM05D000003 ORTHO05D000022 4.2e-08 62.0 112 33.0
Psat7g116320 Pisum sativum HOM05D000003 ORTHO05D000007 4.2e-08 62.0 97 35.1
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.2e-08 61.2 123 26.8
Psat4g006520 Pisum sativum HOM05D000003 ORTHO05D000006 9.4e-08 60.8 96 34.4
Psat5g146080 Pisum sativum HOM05D000003 ORTHO05D000022 9.4e-08 60.8 110 32.7
Atru.chr10.557 Acer truncatum HOM05D000003 ORTHO05D000022 1.6e-07 60.1 120 30.8
THA.LOC104804652 Tarenaya hassleriana HOM05D000003 ORTHO05D000022 1.6e-07 60.1 70 41.4
Atru.chr2.2394 Acer truncatum HOM05D000003 ORTHO05D000022 2.1e-07 59.7 121 28.9
LjContig00408g0006573 Lotus japonicus HOM05D000650 ORTHO05D010020 2.1e-07 59.7 123 30.9
Actinidia03487 Actinidia chinensis HOM05D000003 ORTHO05D000022 2.7e-07 59.3 106 33.0
CSS0014386 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.7e-07 59.3 119 28.6
CSS0047653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.7e-07 59.3 100 33.0
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-07 58.9 120 29.2
Atru.chr12.385 Acer truncatum HOM05D000003 ORTHO05D000022 3.6e-07 58.9 120 30.8
Atru.chr10.1248 Acer truncatum HOM05D000003 ORTHO05D000022 4.7e-07 58.5 112 28.6
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 4.7e-07 58.5 120 25.0
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 4.7e-07 58.5 96 31.2
Psat7g059240 Pisum sativum HOM05D000003 ORTHO05D000022 4.7e-07 58.5 122 32.0
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 6.1e-07 58.2 124 30.6
Atru.chr4.172 Acer truncatum HOM05D000003 ORTHO05D000004 8.0e-07 57.8 120 29.2
RcHm_v2.0_Chr7g0234881 Rosa chinensis HOM05D000650 ORTHO05D010020 8.0e-07 57.8 107 33.6
Atru.chr1.2620 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-06 57.4 99 31.3
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-06 57.4 112 26.8
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-06 57.4 122 30.3
COL.COLO4_07368 Corchorus olitorius HOM05D000003 ORTHO05D000022 1.0e-06 57.4 98 30.6
FvH4_5g34301 Fragaria vesca HOM05D000650 ORTHO05D010020 1.0e-06 57.4 107 31.8
Psat3g207120 Pisum sativum HOM05D000003 ORTHO05D000022 1.0e-06 57.4 97 29.9
QL01p018278 Quercus lobata HOM05D000003 ORTHO05D000022 1.0e-06 57.4 98 31.6
Atru.chr1.1905 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-06 57.0 123 26.0
Atru.chr11.82 Acer truncatum HOM05D000003 ORTHO05D000022 1.4e-06 57.0 131 25.2
Atru.chr7.668 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-06 57.0 121 25.6
Psat0s2399g0080 Pisum sativum HOM05D000003 ORTHO05D037359 1.4e-06 57.0 96 32.3
Rhsim06G0070000 Rhododendron simsii HOM05D000650 ORTHO05D010020 1.8e-06 56.6 123 30.1
Atru.chr12.663 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-06 56.2 119 27.7
Atru.chr13.1101 Acer truncatum HOM05D000003 ORTHO05D000022 2.3e-06 56.2 120 27.5
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-06 56.2 117 28.2
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.3e-06 56.2 117 27.4
Haze_10323 Corylus avellana HOM05D000650 ORTHO05D010020 2.3e-06 56.2 117 31.6
Atru.chr7.259 Acer truncatum HOM05D000003 ORTHO05D000022 3.0e-06 55.8 111 30.6
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 3.0e-06 55.8 116 29.3
Atru.chr1.1484 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-06 55.5 123 29.3
Atru.chr11.1190 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-06 55.5 122 27.9
Atru.chr13.2391 Acer truncatum HOM05D000003 ORTHO05D000022 4.0e-06 55.5 100 29.0
Gorai.006G147200 Gossypium raimondii HOM05D016823 ORTHO05D020811 4.0e-06 55.5 51 47.1
Atru.chr3.2744 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-06 55.1 117 27.4
Lj3g0014530 Lotus japonicus HOM05D000003 ORTHO05D000022 5.2e-06 55.1 101 30.7
QL01p018268 Quercus lobata HOM05D000155 ORTHO05D000022 5.2e-06 55.1 100 31.0
Atru.chr1.3262 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-06 54.7 120 25.0
Atru.chr10.713 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-06 54.7 109 30.3
Atru.chr3.2099 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-06 54.7 110 24.5
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 6.7e-06 54.7 120 25.0
Cpa.g.sc0.187 Carica papaya HOM05D010740 ORTHO05D010953 6.7e-06 54.7 86 34.9
Cpa.g.sc21.40 Carica papaya HOM05D000650 ORTHO05D010020 6.7e-06 54.7 123 28.5
Gorai.001G178300 Gossypium raimondii HOM05D011316 ORTHO05D010953 6.7e-06 54.7 80 36.2
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 8.8e-06 54.3 120 28.3
Atru.chr10.890 Acer truncatum HOM05D000003 ORTHO05D000022 8.8e-06 54.3 119 26.1
COL.COLO4_10353 Corchorus olitorius HOM05D000003 ORTHO05D000006 8.8e-06 54.3 101 32.7
ECA246G1582 Erigeron canadensis HOM05D000003 ORTHO05D000022 8.8e-06 54.3 124 29.0
Gorai.011G200700 Gossypium raimondii HOM05D000065 ORTHO05D001606 8.8e-06 54.3 83 33.7
Lj2C374T9 Lonicera japonica HOM05D000155 ORTHO05D000022 8.8e-06 54.3 128 24.2


User provided reference genes

Program Settings