Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.9e-74 282.3 133 100.0
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.7e-65 251.9 133 92.5
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 3.0e-56 221.9 145 77.2
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 6.7e-56 220.7 145 77.2
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 3.3e-55 218.4 145 77.2
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.8e-54 214.5 145 75.9
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.8e-54 214.5 145 75.9
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 6.3e-54 214.2 145 75.2
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 2.2e-51 205.7 145 73.1
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 5.0e-51 204.5 145 73.1
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 6.5e-51 204.1 144 72.9
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.1e-50 203.4 145 72.4
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.4e-50 203.0 146 71.2
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 1.9e-50 202.6 143 71.3
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.5e-50 202.2 146 70.5
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 2.5e-50 202.2 146 70.5
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 2.5e-50 202.2 144 70.1
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.5e-50 202.2 144 70.8
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 2.5e-50 202.2 147 69.4
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 4.2e-50 201.4 150 69.3
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 4.2e-50 201.4 150 68.7
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 4.2e-50 201.4 150 69.3
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 5.5e-50 201.1 147 71.4
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 5.5e-50 201.1 143 72.0
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 5.5e-50 201.1 145 70.3
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 7.2e-50 200.7 147 70.7
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 9.4e-50 200.3 150 68.0
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 9.4e-50 200.3 150 68.7
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.2e-49 199.9 145 71.7
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.2e-49 199.9 144 69.4
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.2e-49 199.9 145 71.7
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.6e-49 199.5 150 67.3
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 2.1e-49 199.1 144 68.8
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 2.7e-49 198.7 149 67.8
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 2.7e-49 198.7 150 67.3
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 2.7e-49 198.7 151 67.5
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 2.7e-49 198.7 145 72.4
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 3.6e-49 198.4 145 68.3
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 3.6e-49 198.4 145 71.0
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 4.7e-49 198.0 144 68.8
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 4.7e-49 198.0 150 67.3
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 7.9e-49 197.2 145 69.7
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 7.9e-49 197.2 146 71.2
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 2.3e-48 195.7 146 67.8
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 2.3e-48 195.7 145 67.6
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 2.3e-48 195.7 148 67.6
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 3.0e-48 195.3 145 67.6
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 3.0e-48 195.3 142 69.7
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 5.1e-48 194.5 145 71.0
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 5.1e-48 194.5 149 66.4
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 6.7e-48 194.1 145 70.3
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 6.7e-48 194.1 148 66.9
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 8.8e-48 193.7 145 67.6
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 1.1e-47 193.4 145 69.7
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.5e-47 193.0 147 68.0
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.5e-47 193.0 148 68.9
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 2.6e-47 192.2 144 66.7
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 2.6e-47 192.2 141 70.9
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 3.3e-47 191.8 144 69.4
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 4.4e-47 191.4 145 68.3
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 4.4e-47 191.4 145 68.3
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 5.7e-47 191.0 142 68.3
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 5.7e-47 191.0 145 69.7
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 5.7e-47 191.0 142 69.0
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 7.4e-47 190.7 145 69.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 7.4e-47 190.7 144 69.4
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.3e-46 189.9 142 66.9
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.3e-46 189.9 142 68.3
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 1.3e-46 189.9 142 68.3
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 1.7e-46 189.5 147 66.0
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 2.2e-46 189.1 146 68.5
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 2.2e-46 189.1 145 66.2
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 2.8e-46 188.7 146 65.8
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 2.8e-46 188.7 146 65.8
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 2.8e-46 188.7 148 64.9
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 4.8e-46 188.0 142 66.2
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 6.3e-46 187.6 141 69.5
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 8.2e-46 187.2 149 65.1
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 8.2e-46 187.2 149 64.4
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 8.2e-46 187.2 144 68.8
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 1.1e-45 186.8 150 66.0
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 1.4e-45 186.4 149 66.4
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.4e-45 186.4 145 67.6
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 1.4e-45 186.4 140 70.0
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 1.8e-45 186.0 145 64.1
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.8e-45 186.0 153 62.7
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 2.4e-45 185.7 141 69.5
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 2.4e-45 185.7 147 66.0
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 3.1e-45 185.3 147 66.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 3.1e-45 185.3 151 64.9
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 3.1e-45 185.3 144 68.1
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 3.1e-45 185.3 141 68.8
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 5.3e-45 184.5 146 65.8
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 5.3e-45 184.5 145 69.0
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 7.0e-45 184.1 142 65.5
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 1.2e-44 183.3 151 64.2
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 1.5e-44 183.0 147 66.0
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 1.4e-42 176.4 142 64.8
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.9e-42 176.0 142 64.1
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.5e-42 175.6 147 62.6
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 5.5e-42 174.5 144 64.6
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 5.5e-42 174.5 157 63.1
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 7.2e-42 174.1 171 56.7
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.6e-41 171.8 142 63.4
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 1.1e-39 166.8 142 62.0
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 2.8e-38 162.2 129 66.7
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 8.2e-38 160.6 128 68.0
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 8.2e-38 160.6 139 62.6
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 8.2e-38 160.6 140 58.6
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 1.1e-37 160.2 145 57.9
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.7e-36 154.1 141 57.4
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 1.0e-35 153.7 127 63.8
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.3e-35 153.3 141 56.7
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 1.7e-35 152.9 141 51.8
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 3.8e-35 151.8 153 50.3
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.5e-34 149.8 119 65.5
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.9e-34 149.4 119 65.5
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 3.2e-34 148.7 145 51.0
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.1e-33 146.0 113 68.1
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.8e-30 135.6 149 51.7
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 8.3e-30 134.0 144 47.2
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.1e-29 133.7 149 51.7
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 1.1e-26 123.6 146 44.5
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 6.8e-24 114.4 82 69.5
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 4.5e-20 101.7 82 63.4
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 7.2e-18 94.4 58 75.9
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.6e-17 92.0 94 52.1
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 5.2e-16 88.2 58 70.7
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 1.7e-14 83.2 146 37.0
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 2.0e-07 59.7 128 36.7


User provided reference genes

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