Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G170800 Gossypium raimondii HOM05D002373 ORTHO05D008661 2.1e-112 409.1 212 100.0
Gohir.D13G151000 Gossypium hirsutum HOM05D002373 ORTHO05D008661 4.7e-112 407.9 212 99.5
Gohir.A13G146100 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.2e-110 403.3 212 97.6
Thecc.07G090300 Theobroma cacao HOM05D002373 ORTHO05D008661 2.1e-104 382.5 212 91.5
COL.COLO4_27178 Corchorus olitorius HOM05D002373 ORTHO05D008661 1.4e-100 369.8 212 87.3
Atru.BG.257.p Acer truncatum HOM05D002373 ORTHO05D008661 1.0e-98 363.6 211 85.3
Atru.BG.152.p Acer truncatum HOM05D002373 ORTHO05D008661 3.9e-98 361.7 211 84.8
Ciclev10008924m.g Citrus clementina HOM05D002373 ORTHO05D008661 5.1e-98 361.3 212 83.0
THA.LOC104810464 Tarenaya hassleriana HOM05D002373 ORTHO05D008661 1.5e-97 359.8 210 86.2
GSVIVG01014327001 Vitis vinifera HOM05D002373 ORTHO05D008661 3.3e-97 358.6 212 84.9
Nn1g04122 Nelumbo nucifera HOM05D002373 ORTHO05D008661 1.1e-95 353.6 212 82.1
Cpa.g.sc80.70 Carica papaya HOM05D002373 ORTHO05D008661 2.4e-95 352.4 212 82.1
Manes.03G109500 Manihot esculenta HOM05D002373 ORTHO05D008661 4.0e-95 351.7 212 82.1
Aa31LG10G2010 Aethionema arabicum HOM05D002373 ORTHO05D008661 1.2e-94 350.1 210 81.0
AL1G61480 Arabidopsis lyrata HOM05D002373 ORTHO05D008661 1.5e-94 349.7 212 81.1
TAR624G1149 Trochodendron aralioides HOM05D002373 ORTHO05D008661 1.5e-94 349.7 212 81.6
Sabra11G0104200 Salix brachista HOM05D002373 ORTHO05D008661 2.6e-94 349.0 210 81.4
Actinidia35249 Actinidia chinensis HOM05D002373 ORTHO05D008661 4.4e-94 348.2 212 81.1
Phvul.002G286700 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 5.8e-94 347.8 212 79.2
MELO3C019408.2 Cucumis melo HOM05D002373 ORTHO05D008661 1.3e-93 346.7 212 79.7
Thhalv10011660m.g Eutrema salsugineum HOM05D002373 ORTHO05D008661 1.7e-93 346.3 210 80.0
Carub.0001s4228 Capsella rubella HOM05D002373 ORTHO05D008661 2.9e-93 345.5 210 81.4
CSS0006904 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 3.8e-93 345.1 212 79.7
CsaV3_3G019460 Cucumis sativus L. HOM05D002373 ORTHO05D008661 3.8e-93 345.1 212 78.8
Glyma.12G224900 Glycine max HOM05D002373 ORTHO05D008661 3.8e-93 345.1 212 78.3
Eucgr.F01146 Eucalyptus grandis HOM05D002373 ORTHO05D008661 6.4e-93 344.4 212 79.7
MBI06_g23077_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D008661 6.4e-93 344.4 212 79.2
A05p18620 Brassica napus HOM05D002373 ORTHO05D008661 1.1e-92 343.6 210 80.0
BraA05t20753Z Brassica rapa HOM05D002373 ORTHO05D008661 1.1e-92 343.6 210 80.0
CARHR043340 Cardamine hirsuta HOM05D002373 ORTHO05D008661 1.1e-92 343.6 210 80.5
DCAR_019560 Daucus carota HOM05D002373 ORTHO05D008661 1.1e-92 343.6 212 78.3
Sed0026190 Sechium edule HOM05D002373 ORTHO05D008661 3.2e-92 342.0 212 78.3
PGSC0003DMG400015321 Solanum tuberosum HOM05D002373 ORTHO05D008661 3.2e-92 342.0 212 78.3
arahy.Tifrunner.gnm1.ann1.CVL1T8 Arachis hypogaea HOM05D002373 ORTHO05D008661 4.2e-92 341.7 212 77.8
Dinv20179 Davidia involucrata HOM05D002373 ORTHO05D008661 5.4e-92 341.3 212 80.2
Sp1g39670 Schrenkiella parvula HOM05D002373 ORTHO05D008661 5.4e-92 341.3 210 79.5
arahy.Tifrunner.gnm1.ann1.D1WMTZ Arachis hypogaea HOM05D002373 ORTHO05D008661 7.1e-92 340.9 212 77.8
BcaC08g44045 Brassica carinata HOM05D002373 ORTHO05D008661 7.1e-92 340.9 210 78.6
BolC6t36626H Brassica oleracea HOM05D002373 ORTHO05D008661 7.1e-92 340.9 210 78.6
Lj3g0019501 Lotus japonicus HOM05D002373 ORTHO05D008661 9.3e-92 340.5 212 77.4
RcHm_v2.0_Chr5g0033281 Rosa chinensis HOM05D002373 ORTHO05D008661 9.3e-92 340.5 212 76.4
AT1G53120 Arabidopsis thaliana HOM05D002373 ORTHO05D008661 1.2e-91 340.1 210 79.0
Sopen12g007190 Solanum pennellii HOM05D002373 ORTHO05D008661 1.2e-91 340.1 212 77.8
VMungo1080G1315 Vigna mungo HOM05D002373 ORTHO05D008661 1.2e-91 340.1 212 77.8
CANSAT56G3654 Cannabis sativa HOM05D002373 ORTHO05D008661 1.6e-91 339.7 212 78.3
ECA240G3063 Erigeron canadensis HOM05D002373 ORTHO05D008661 1.6e-91 339.7 212 75.9
Solyc12g013870.3 Solanum lycopersicum HOM05D002373 ORTHO05D008661 1.6e-91 339.7 212 77.8
Ca_03504_v3 Cicer arietinum L. HOM05D002373 ORTHO05D008661 2.1e-91 339.3 212 75.9
HanXRQChr12g0364201 Helianthus annuus HOM05D002373 ORTHO05D008661 2.1e-91 339.3 212 76.4
Lalb_Chr25g0286331 Lupinus albus HOM05D002373 ORTHO05D008661 2.1e-91 339.3 212 76.9
QL08p022081 Quercus lobata HOM05D002373 ORTHO05D008661 2.1e-91 339.3 211 77.3
FvH4_3g19840 Fragaria vesca HOM05D002373 ORTHO05D008661 4.6e-91 338.2 211 75.8
FAN21G4050 Fragaria x ananassa HOM05D002373 ORTHO05D008661 4.6e-91 338.2 212 75.9
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 7.8e-91 337.4 209 78.9
C06p14460 Brassica napus HOM05D002373 ORTHO05D008661 7.8e-91 337.4 210 77.6
CAN.G213.9 Capsicum annuum HOM05D002373 ORTHO05D008661 7.8e-91 337.4 212 76.4
Potri.011G119800 Populus trichocarpa HOM05D002373 ORTHO05D008661 7.8e-91 337.4 210 80.0
MD11G1252400 Malus domestica HOM05D002373 ORTHO05D008661 1.0e-90 337.0 212 77.4
MSTRG.12905 Avicennia marina HOM05D002373 ORTHO05D008661 1.7e-90 336.3 212 77.4
Cfa020577 Carpinus fangiana HOM05D002373 ORTHO05D008661 2.3e-90 335.9 212 75.5
Prupe.4G180500 Prunus persica HOM05D002373 ORTHO05D008661 2.3e-90 335.9 212 76.9
Medtr2g085340 Medicago truncatula HOM05D002373 ORTHO05D008661 5.1e-90 334.7 212 74.5
Lsat_1_v5_gn_9_97941 Lactuca sativa HOM05D002373 ORTHO05D008661 6.6e-90 334.3 212 75.0
FAN11G3740 Fragaria x ananassa HOM05D002373 ORTHO05D008661 8.7e-90 334.0 211 75.4
FAN25G2634 Fragaria x ananassa HOM05D002373 ORTHO05D008661 8.7e-90 334.0 212 75.0
Psat5g243920 Pisum sativum HOM05D002373 ORTHO05D008661 8.7e-90 334.0 212 74.1
Phvul.005G072600 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.5e-89 333.2 212 77.4
TPR.G39017 Trifolium pratense HOM05D002373 ORTHO05D008661 1.9e-89 332.8 212 74.1
vmacro09529 Vaccinium macrocarpon HOM05D002373 ORTHO05D008661 1.9e-89 332.8 215 77.7
FAN16G2188 Fragaria x ananassa HOM05D002373 ORTHO05D008661 5.6e-89 331.3 212 74.1
ClCG05G009320 Citrullus lanatus HOM05D002373 ORTHO05D008661 1.3e-88 330.1 223 74.0
CDE02G2303 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 1.6e-88 329.7 210 74.8
Migut.H01944 Erythranthe guttata HOM05D002373 ORTHO05D008661 1.6e-88 329.7 213 74.6
CSS0005109 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.8e-88 328.9 213 77.9
Zm00001eb153060 Zea mays HOM05D002373 ORTHO05D008661 2.8e-88 328.9 212 75.9
PGR083G2563 Punica granatum HOM05D002373 ORTHO05D008661 6.2e-88 327.8 212 76.9
Aqoxy1G02390 Aquilegia oxysepala HOM05D002373 ORTHO05D008661 1.4e-87 326.6 210 76.7
CiPaw.11G170200 Carya illinoinensis HOM05D002373 ORTHO05D008661 3.1e-87 325.5 233 70.4
Os01g0747700 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D008661 3.1e-87 325.5 212 74.5
SGA_v2.0_scaffold70G23676 Striga asiatica HOM05D002373 ORTHO05D008661 4.9e-85 318.2 232 67.7
HPP92_024439 Vanilla planifolia HOM05D002373 ORTHO05D008661 9.3e-84 313.9 209 72.7
Lj1C842T3 Lonicera japonica HOM05D002373 ORTHO05D008661 1.2e-83 313.5 212 72.2
Peaxi162Scf00000g03511 Petunia axillaris HOM05D002373 ORTHO05D008661 3.0e-82 308.9 192 77.1
Ah.06g184370 Amaranthus hybridus HOM05D002373 ORTHO05D008661 8.7e-82 307.4 212 72.2
EL10Ac4g08187 Beta vulgaris HOM05D002373 ORTHO05D008661 8.7e-82 307.4 212 71.7
Hund20000 Selenicereus undatus HOM05D002373 ORTHO05D008661 8.7e-82 307.4 212 73.1
AUR62019433 Chenopodium quinoa HOM05D002373 ORTHO05D008661 2.5e-81 305.8 215 72.6
Nitab4.5_0009292g0020 Nicotiana tabacum HOM05D002373 ORTHO05D008661 4.3e-81 305.1 191 76.4
AUR62039201 Chenopodium quinoa HOM05D002373 ORTHO05D008661 2.8e-80 302.4 215 72.1
ATR0737G132 Amborella trichopoda HOM05D002373 ORTHO05D008661 2.6e-78 295.8 189 75.7
unitig_26.g9527 Utricularia gibba HOM05D002373 ORTHO05D008661 2.9e-77 292.4 206 68.9
Rhsim04G0021500 Rhododendron simsii HOM05D002373 ORTHO05D008661 2.1e-72 276.2 212 68.9
Sc03g0010080 Simmondsia chinensis HOM05D002373 ORTHO05D008661 1.4e-71 273.5 191 71.2
Haze_09434 Corylus avellana HOM05D002373 ORTHO05D008661 1.2e-70 270.4 212 63.2
Nitab4.5_0000332g0080 Nicotiana tabacum HOM05D002373 ORTHO05D008661 9.3e-68 260.8 191 68.6
TWI38G1988 Tripterygium wilfordii HOM05D002373 ORTHO05D008661 9.3e-68 260.8 157 79.6
Pp3c20_21790 Physcomitrium patens HOM05D002373 ORTHO05D008661 3.9e-66 255.4 221 57.5
PSO541G6350 Papaver somniferum HOM05D002373 ORTHO05D008661 2.4e-63 246.1 157 74.5
Oeu060559.2 Olea europaea HOM05D002373 ORTHO05D008661 4.1e-63 245.4 274 49.6
AagrBONN_evm.TU.Sc2ySwM_344.3401 Anthoceros agrestis HOM05D002373 ORTHO05D008661 7.6e-62 241.1 218 54.1
CDE08G0691 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 1.0e-61 240.7 156 75.0
Mapoly0051s0038 Marchantia polymorpha HOM05D002373 ORTHO05D008661 3.5e-59 232.3 218 54.1
SMO367G1013 Selaginella moellendorffii HOM05D002373 ORTHO05D008661 3.9e-58 228.8 216 53.2
Gorai.013G169000 Gossypium raimondii HOM05D002373 ORTHO05D008661 3.4e-54 215.7 109 100.0
Cre12.g502950 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D008661 9.4e-52 207.6 218 49.1
MCO14G219 Micromonas commoda HOM05D002373 ORTHO05D008661 1.7e-48 196.8 223 46.2
Glyma.13G276400 Glycine max HOM05D002373 ORTHO05D008661 3.8e-45 185.7 137 63.5
Gohir.D13G152082 Gossypium hirsutum HOM05D002373 ORTHO05D008661 2.0e-38 163.3 88 97.7
Gorai.013G170900 Gossypium raimondii HOM05D002373 ORTHO05D008661 5.9e-38 161.8 88 97.7
CSS0025404 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 2.9e-37 159.5 104 73.1
Gohir.A13G147066 Gossypium hirsutum HOM05D002373 ORTHO05D008661 8.8e-34 147.9 81 96.3
Thecc.07G090900 Theobroma cacao HOM05D002373 ORTHO05D008661 2.0e-30 136.7 80 83.8
A01p26780 Brassica napus HOM05D002373 ORTHO05D008661 1.8e-23 113.6 76 75.0
CSS0007754 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 6.1e-19 98.6 65 70.8
CSS0007182 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 1.8e-18 97.1 64 71.9
PRCOL_00005720 Prasinoderma coloniale HOM05D002373 ORTHO05D008661 1.3e-13 80.9 246 29.3
BcaC05g28656 Brassica carinata HOM05D022203 ORTHO05D024331 5.2e-10 68.9 36 88.9
Atru.chr2.2601 Acer truncatum HOM05D002373 ORTHO05D013107 1.5e-09 67.4 35 91.4
MD11G1248800 Malus domestica HOM05D002373 ORTHO05D008661 3.2e-07 59.7 157 36.3


User provided reference genes

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