Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.4e-34 149.1 75 100.0
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 2.8e-19 98.2 59 86.4
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.7e-19 97.8 59 86.4
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.7e-19 97.8 59 86.4
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.7e-19 97.8 59 86.4
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 6.3e-19 97.1 59 84.7
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 6.3e-19 97.1 59 84.7
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-18 96.3 59 84.7
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 1.1e-18 96.3 59 84.7
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.8e-18 95.5 59 84.7
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.8e-18 95.5 59 84.7
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.8e-18 95.5 59 84.7
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 2.4e-18 95.1 59 84.7
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 3.1e-18 94.7 59 81.4
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.1e-18 94.7 59 84.7
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 4.1e-18 94.4 59 83.1
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 4.1e-18 94.4 59 83.1
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 4.1e-18 94.4 59 83.1
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 4.1e-18 94.4 59 83.1
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 83.1
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 83.1
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 7.0e-18 93.6 56 85.7
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 81.4
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 83.1
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 7.0e-18 93.6 59 83.1
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 81.4
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.2e-17 92.8 59 83.1
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.6e-17 92.4 59 83.1
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 1.6e-17 92.4 59 83.1
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 1.6e-17 92.4 59 83.1
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 3.5e-17 91.3 50 92.0
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 81.4
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 4.5e-17 90.9 59 78.0
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 5.9e-17 90.5 59 79.7
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 1.0e-16 89.7 59 78.0
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 1.3e-16 89.4 59 79.7
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.3e-16 89.4 59 79.7
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 5.0e-16 87.4 59 78.0
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.5e-15 85.9 59 74.6
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 9.4e-15 83.2 59 74.6
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-14 82.8 59 76.3
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 8.0e-14 80.1 59 74.6
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 1.0e-13 79.7 57 73.7
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 2.3e-13 78.6 50 80.0
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 5.2e-13 77.4 53 75.5
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-12 76.3 48 81.2
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 3.4e-12 74.7 46 82.6
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 3.4e-12 74.7 46 82.6
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.4e-12 74.7 50 76.0
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 4.4e-12 74.3 41 90.2
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 4.4e-12 74.3 59 69.5
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 5.7e-12 73.9 45 82.2
BolC4t25866H Brassica oleracea HOM05D004570 ORTHO05D005494 3.5e-09 64.7 37 86.5
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 1.7e-08 62.4 42 73.8
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 1.7e-08 62.4 42 73.8
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.7e-08 62.4 41 75.6
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 2.2e-08 62.0 51 70.6
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 5.0e-08 60.8 46 71.7
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 1.5e-07 59.3 40 72.5
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.9e-07 58.9 40 72.5
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.2e-07 58.2 52 63.5
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 2.7e-06 55.1 42 69.0
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 8.0e-06 53.5 44 68.2
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 8.0e-06 53.5 44 68.2


User provided reference genes

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