Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 2.2e-109 399.1 212 100.0
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 6.0e-107 391.0 212 98.1
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.0e-106 390.2 212 98.1
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 6.4e-85 317.8 214 83.2
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 2.1e-83 312.8 213 83.1
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 1.0e-82 310.5 211 81.0
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 4.5e-70 268.5 218 71.6
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 4.5e-70 268.5 218 71.6
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 4.5e-70 268.5 226 69.0
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 4.9e-69 265.0 214 69.2
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 1.9e-68 263.1 217 69.1
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 4.2e-68 261.9 225 69.8
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 7.1e-68 261.2 221 67.0
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 3.5e-67 258.8 221 70.1
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 4.6e-67 258.5 215 70.7
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 1.0e-66 257.3 230 65.2
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 1.3e-66 256.9 217 70.5
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 2.3e-66 256.1 217 69.6
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 2.3e-66 256.1 221 70.6
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 5.1e-66 255.0 219 71.7
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 5.1e-66 255.0 230 65.7
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 5.1e-66 255.0 227 67.0
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 5.1e-66 255.0 218 68.3
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 5.1e-66 255.0 221 67.4
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 8.7e-66 254.2 221 69.7
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 8.7e-66 254.2 215 70.2
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 1.1e-65 253.8 221 69.7
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.1e-65 253.8 221 69.7
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 1.9e-65 253.1 227 65.6
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.9e-65 253.1 184 77.2
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 4.3e-65 251.9 153 87.6
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 7.4e-65 251.1 221 67.9
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 9.6e-65 250.8 212 68.9
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 1.6e-64 250.0 219 70.8
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 1.6e-64 250.0 176 77.3
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 2.1e-64 249.6 219 70.8
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 2.1e-64 249.6 177 78.0
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 4.8e-64 248.4 219 70.3
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 4.8e-64 248.4 219 70.3
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 4.8e-64 248.4 219 70.3
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 4.8e-64 248.4 203 69.5
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 6.2e-64 248.1 183 74.9
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 8.2e-64 247.7 216 69.4
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 8.2e-64 247.7 214 69.6
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 1.4e-63 246.9 221 67.0
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 1.4e-63 246.9 203 70.0
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 1.8e-63 246.5 216 69.0
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 1.8e-63 246.5 220 65.5
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.1e-63 245.7 217 67.7
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 3.1e-63 245.7 203 70.0
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 4.1e-63 245.4 226 66.4
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 5.3e-63 245.0 222 68.0
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 1.2e-62 243.8 218 68.3
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 1.2e-62 243.8 216 69.0
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 1.5e-62 243.4 218 64.2
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 2.6e-62 242.7 176 78.4
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 2.6e-62 242.7 205 68.8
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 3.4e-62 242.3 151 85.4
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 3.4e-62 242.3 214 68.2
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 3.4e-62 242.3 225 65.3
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 4.5e-62 241.9 216 68.5
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 4.5e-62 241.9 212 65.6
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 5.8e-62 241.5 214 68.2
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 1.0e-61 240.7 202 67.8
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 1.7e-61 240.0 217 69.1
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 2.2e-61 239.6 240 61.7
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 2.2e-61 239.6 224 63.8
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 2.9e-61 239.2 206 66.0
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 3.8e-61 238.8 147 83.7
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 1.4e-60 236.9 205 68.8
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 1.9e-60 236.5 221 64.7
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 9.3e-60 234.2 220 65.0
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 9.3e-60 234.2 228 62.3
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 1.6e-59 233.4 224 61.6
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 2.1e-59 233.0 179 74.9
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 1.8e-58 229.9 162 78.4
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 2.3e-58 229.6 168 73.2
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 6.7e-58 228.0 206 63.1
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 9.7e-57 224.2 202 68.3
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 2.2e-56 223.0 199 65.3
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 3.7e-56 222.2 223 62.8
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 6.3e-56 221.5 223 62.3
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 8.2e-56 221.1 169 71.6
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 4.5e-54 215.3 214 62.1
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 7.7e-54 214.5 226 59.3
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 2.5e-52 209.5 213 59.6
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 2.1e-51 206.5 128 82.0
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 6.7e-50 201.4 212 57.1
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.4e-47 193.7 155 69.0
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 5.3e-47 191.8 150 66.7
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 3.2e-44 182.6 118 81.4
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 2.3e-42 176.4 228 54.8
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 9.7e-41 171.0 107 86.0
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 3.7e-40 169.1 168 57.7
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 4.1e-39 165.6 188 51.6
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 5.0e-37 158.7 108 73.1
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 1.0e-29 134.4 82 87.8
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 6.5e-29 131.7 82 86.6
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 5.5e-28 128.6 144 59.7
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 5.7e-25 118.6 95 69.5
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.1e-23 114.4 74 81.1
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 1.2e-22 110.9 80 73.8
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 2.2e-21 106.7 189 37.6
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 2.7e-19 99.8 102 59.8
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 8.3e-16 88.2 58 79.3
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 1.7e-13 80.5 112 38.4
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 1.2e-11 74.3 48 81.2
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.6e-11 73.9 46 84.8
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 2.3e-10 70.1 107 43.0
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 8.9e-10 68.2 103 37.9
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.1e-07 59.3 37 81.1


User provided reference genes

Program Settings