Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G157100 Gossypium raimondii HOM05D004486 ORTHO05D024415 2.7e-97 358.6 175 100.0
Gohir.D04G090332 Gossypium hirsutum HOM05D004486 ORTHO05D024415 8.2e-86 320.5 175 92.0
Gohir.A13G021200 Gossypium hirsutum HOM05D004486 ORTHO05D006329 9.4e-58 227.3 143 83.2
Gorai.013G024500 Gossypium raimondii HOM05D004486 ORTHO05D006329 6.1e-57 224.6 143 82.5
Gohir.D13G021700 Gossypium hirsutum HOM05D004486 ORTHO05D006329 1.4e-56 223.4 143 82.5
Gohir.D06G074650 Gossypium hirsutum HOM05D004486 ORTHO05D024415 2.1e-49 199.5 118 89.0
Duzib128G1554 Durio zibethinus HOM05D004486 ORTHO05D006329 1.4e-45 186.8 128 75.0
Duzib106G0308 Durio zibethinus HOM05D004486 ORTHO05D006329 2.0e-44 183.0 128 73.4
Thecc.10G065100 Theobroma cacao HOM05D004486 ORTHO05D006329 2.5e-42 176.0 128 72.7
Gohir.D13G137700 Gossypium hirsutum HOM05D004486 ORTHO05D024415 2.8e-41 172.6 98 89.8
TWI38G2347 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 2.9e-35 152.5 128 62.5
QL08p057259 Quercus lobata HOM05D004486 ORTHO05D006329 3.9e-35 152.1 128 61.7
CSS0008191 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 8.6e-35 151.0 128 64.1
CSS0049406 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 3.3e-34 149.1 128 63.3
Ciclev10030974m.g Citrus clementina HOM05D004486 ORTHO05D006329 5.6e-34 148.3 128 63.3
Atru.chr12.611 Acer truncatum HOM05D004486 ORTHO05D006329 1.2e-33 147.1 128 60.9
Actinidia03014 Actinidia chinensis HOM05D004486 ORTHO05D006329 1.2e-33 147.1 128 63.3
Ah.10g033110 Amaranthus hybridus HOM05D004486 ORTHO05D006329 2.1e-33 146.4 128 60.2
EL10Ac2g03540 Beta vulgaris HOM05D004486 ORTHO05D006329 2.8e-33 146.0 128 60.9
Prupe.2G220700 Prunus persica HOM05D004486 ORTHO05D006329 3.6e-33 145.6 128 61.7
Lj7A436T61 Lonicera japonica HOM05D004486 ORTHO05D006329 4.7e-33 145.2 128 61.7
CSS0021534 Camellia sinensis var. sinensis HOM05D004486 ORTHO05D006329 1.8e-32 143.3 140 57.1
Hma1.2p1_2685F.1_g326910 Hydrangea macrophylla HOM05D004486 ORTHO05D006329 2.3e-32 142.9 128 58.6
Potri.008G045900 Populus trichocarpa HOM05D004486 ORTHO05D006329 3.1e-32 142.5 128 59.4
TAR369G0956 Trochodendron aralioides HOM05D004486 ORTHO05D006329 3.1e-32 142.5 128 60.9
Potri.010G215700 Populus trichocarpa HOM05D004486 ORTHO05D006329 6.8e-32 141.4 125 59.2
TWI38G1612 Tripterygium wilfordii HOM05D004486 ORTHO05D006329 6.8e-32 141.4 128 61.7
Medtr1g116230 Medicago truncatula HOM05D004486 ORTHO05D006329 8.9e-32 141.0 128 57.8
Peaxi162Scf01024g00121 Petunia axillaris HOM05D004486 ORTHO05D006329 3.4e-31 139.0 128 60.9
Haze_16953 Corylus avellana HOM05D004486 ORTHO05D006329 4.4e-31 138.7 164 48.2
Lalb_Chr21g0307511 Lupinus albus HOM05D004486 ORTHO05D006329 4.4e-31 138.7 128 57.8
Psat6g239960 Pisum sativum HOM05D004486 ORTHO05D006329 5.8e-31 138.3 128 59.4
A02p02010 Brassica napus HOM05D004486 ORTHO05D006329 9.8e-31 137.5 128 55.5
BraA02t05173Z Brassica rapa HOM05D004486 ORTHO05D006329 1.3e-30 137.1 128 55.5
Nitab4.5_0000830g0030 Nicotiana tabacum HOM05D004486 ORTHO05D006329 1.3e-30 137.1 128 60.9
Sabra10G0166800 Salix brachista HOM05D004486 ORTHO05D006329 1.3e-30 137.1 128 56.2
Lj5g0008233 Lotus japonicus HOM05D004486 ORTHO05D006329 1.7e-30 136.7 128 59.4
BcaC04g19110 Brassica carinata HOM05D004486 ORTHO05D006329 2.2e-30 136.3 143 52.4
Cfa001575 Carpinus fangiana HOM05D004486 ORTHO05D006329 2.2e-30 136.3 164 47.6
CiPaw.01G277900 Carya illinoinensis HOM05D004486 ORTHO05D006329 2.2e-30 136.3 128 57.0
Dinv11819 Davidia involucrata HOM05D004486 ORTHO05D006329 2.2e-30 136.3 128 57.8
THA.LOC104827314 Tarenaya hassleriana HOM05D004486 ORTHO05D006329 2.9e-30 136.0 128 56.2
Lsat_1_v5_gn_8_21161 Lactuca sativa HOM05D004486 ORTHO05D006329 3.7e-30 135.6 128 58.6
Nn2g12957 Nelumbo nucifera HOM05D004486 ORTHO05D006329 3.7e-30 135.6 128 56.2
BcaNung01146 Brassica carinata HOM05D004486 ORTHO05D006329 4.9e-30 135.2 128 54.7
Manes.18G141033 Manihot esculenta HOM05D004486 ORTHO05D006329 4.9e-30 135.2 128 60.2
Sabra08G0032200 Salix brachista HOM05D004486 ORTHO05D006329 4.9e-30 135.2 128 57.8
Manes.18G142200 Manihot esculenta HOM05D004486 ORTHO05D006329 6.4e-30 134.8 128 60.2
Manes.18G141037 Manihot esculenta HOM05D004486 ORTHO05D006329 8.3e-30 134.4 128 60.2
Nitab4.5_0000561g0010 Nicotiana tabacum HOM05D004486 ORTHO05D006329 8.3e-30 134.4 129 59.7
Sed0016157 Sechium edule HOM05D004486 ORTHO05D006329 8.3e-30 134.4 144 55.6
Hund19290 Selenicereus undatus HOM05D004486 ORTHO05D006329 8.3e-30 134.4 128 57.8
MSTRG.361 Avicennia marina HOM05D004486 ORTHO05D006329 1.1e-29 134.0 129 55.8
C09p63580 Brassica napus HOM05D004486 ORTHO05D006329 1.1e-29 134.0 128 55.5
FAN10G3892 Fragaria x ananassa HOM05D004486 ORTHO05D006329 1.1e-29 134.0 128 57.0
Phvul.007G005900 Phaseolus vulgaris HOM05D004486 ORTHO05D006329 1.1e-29 134.0 128 59.4
RcHm_v2.0_Chr1g0364401 Rosa chinensis HOM05D004486 ORTHO05D006329 1.1e-29 134.0 128 55.5
BcaNung06330 Brassica carinata HOM05D004486 ORTHO05D024415 1.4e-29 133.7 169 45.0
CANSAT11G2341 Cannabis sativa HOM05D004486 ORTHO05D006329 1.4e-29 133.7 127 57.5
Ca_11379_v3 Cicer arietinum L. HOM05D004486 ORTHO05D006329 1.9e-29 133.3 130 55.4
Peaxi162Scf01024g00123 Petunia axillaris HOM05D004486 ORTHO05D006329 2.4e-29 132.9 144 53.5
Aa31sc127G20 Aethionema arabicum HOM05D004486 ORTHO05D006329 4.1e-29 132.1 128 56.2
TPR.G10423 Trifolium pratense HOM05D004486 ORTHO05D006329 5.4e-29 131.7 129 57.4
PGR044G2316 Punica granatum HOM05D004486 ORTHO05D006329 7.0e-29 131.3 128 57.8
A10p24750 Brassica napus HOM05D004486 ORTHO05D006329 9.2e-29 131.0 128 54.7
BraA10t44538Z Brassica rapa HOM05D004486 ORTHO05D006329 9.2e-29 131.0 128 54.7
FvH4_7g20511 Fragaria vesca HOM05D004486 ORTHO05D006329 2.0e-28 129.8 128 56.2
FAN06G4255 Fragaria x ananassa HOM05D004486 ORTHO05D006329 2.0e-28 129.8 128 56.2
FAN06G4941 Fragaria x ananassa HOM05D004486 ORTHO05D006329 2.0e-28 129.8 128 56.2
HanXRQChr12g0367761 Helianthus annuus HOM05D004486 ORTHO05D006329 2.0e-28 129.8 128 56.2
SEGI_27690 Sequoiadendron giganteum HOM05D004486 ORTHO05D006329 2.0e-28 129.8 128 55.5
SGA_v2.0_scaffold71G24033 Striga asiatica HOM05D004486 ORTHO05D006329 2.7e-28 129.4 129 55.8
AL6G24140 Arabidopsis lyrata HOM05D004486 ORTHO05D006329 3.5e-28 129.0 128 53.1
Carub.0006s1168 Capsella rubella HOM05D004486 ORTHO05D006329 3.5e-28 129.0 128 53.9
MD07G1182000 Malus domestica HOM05D004486 ORTHO05D006329 3.5e-28 129.0 128 55.5
VMungo0720G3071 Vigna mungo HOM05D004486 ORTHO05D006329 4.6e-28 128.6 128 55.5
BolC9t59201H Brassica oleracea HOM05D004486 ORTHO05D006329 6.0e-28 128.3 128 53.9
CAN.G742.18 Capsicum annuum HOM05D004486 ORTHO05D006329 6.0e-28 128.3 129 57.4
PSO339G6713 Papaver somniferum HOM05D004486 ORTHO05D006329 6.0e-28 128.3 128 55.5
DCAR_006479 Daucus carota HOM05D004486 ORTHO05D006329 7.8e-28 127.9 126 54.8
Migut.F01788 Erythranthe guttata HOM05D004486 ORTHO05D006329 7.8e-28 127.9 129 53.5
MD01G1113900 Malus domestica HOM05D004486 ORTHO05D006329 7.8e-28 127.9 129 56.6
PSO384G2310 Papaver somniferum HOM05D004486 ORTHO05D006329 7.8e-28 127.9 128 55.5
Gohir.D05G302766 Gossypium hirsutum HOM05D015933 ORTHO05D217172 1.3e-27 127.1 98 70.4
arahy.Tifrunner.gnm1.ann1.GKFC1I Arachis hypogaea HOM05D004486 ORTHO05D006329 1.7e-27 126.7 128 54.7
arahy.Tifrunner.gnm1.ann1.Q6727A Arachis hypogaea HOM05D004486 ORTHO05D006329 1.7e-27 126.7 128 54.7
Solyc04g049720.4 Solanum lycopersicum HOM05D004486 ORTHO05D006329 1.7e-27 126.7 144 52.1
Sopen04g019990 Solanum pennellii HOM05D004486 ORTHO05D006329 1.7e-27 126.7 144 52.1
PGSC0003DMG400028998 Solanum tuberosum HOM05D004486 ORTHO05D006329 1.7e-27 126.7 144 52.1
AT5G13520 Arabidopsis thaliana HOM05D004486 ORTHO05D006329 2.3e-27 126.3 128 52.3
SalBow3G3918 Salvia bowleyana HOM05D004486 ORTHO05D006329 2.3e-27 126.3 129 53.5
MBI05_g24466_MAGBIO Magnolia biondii HOM05D004486 ORTHO05D006329 6.6e-27 124.8 131 54.2
Aqoxy4G03158 Aquilegia oxysepala HOM05D004486 ORTHO05D006329 8.6e-27 124.4 128 53.9
Thhalv10012982m.g Eutrema salsugineum HOM05D004486 ORTHO05D006329 8.6e-27 124.4 128 52.3
VMungo0720G1168 Vigna mungo HOM05D004486 ORTHO05D006329 8.6e-27 124.4 128 54.7
ECA233G4916 Erigeron canadensis HOM05D004486 ORTHO05D006329 1.1e-26 124.0 128 56.2
MSTRG.8160 Avicennia marina HOM05D004486 ORTHO05D006329 1.9e-26 123.2 129 51.2
Nitab4.5_0000830g0050 Nicotiana tabacum HOM05D004486 ORTHO05D006329 1.9e-26 123.2 145 51.7
ATR0594G057 Amborella trichopoda HOM05D004486 ORTHO05D006329 2.5e-26 122.9 128 51.6
MD01G1114100 Malus domestica HOM05D004486 ORTHO05D006329 3.3e-26 122.5 129 55.0
Nitab4.5_0005262g0010 Nicotiana tabacum HOM05D004486 ORTHO05D006329 3.3e-26 122.5 145 51.7
ClCG09G020360 Citrullus lanatus HOM05D004486 ORTHO05D006329 9.5e-26 120.9 128 53.9
Oeu016149.1 Olea europaea HOM05D004486 ORTHO05D006329 9.5e-26 120.9 128 50.0
Sp6g30500 Schrenkiella parvula HOM05D004486 ORTHO05D006329 9.5e-26 120.9 128 50.8
CsaV3_5G026050 Cucumis sativus L. HOM05D004486 ORTHO05D006329 2.1e-25 119.8 128 53.9
Cc09_g02360 Coffea canephora HOM05D004486 ORTHO05D006329 2.8e-25 119.4 129 52.7
MELO3C025494.2 Cucumis melo HOM05D004486 ORTHO05D006329 2.8e-25 119.4 128 53.1
unitig_60.g25720 Utricularia gibba HOM05D004486 ORTHO05D006329 3.6e-25 119.0 129 52.7
CDE04G1784 Ceratophyllum demersum HOM05D004486 ORTHO05D006329 4.7e-25 118.6 128 53.1
HPP92_026987 Vanilla planifolia HOM05D004486 ORTHO05D006329 8.1e-25 117.9 133 52.6
vmacro07094 Vaccinium macrocarpon HOM05D004486 ORTHO05D006329 1.8e-24 116.7 128 52.3
SEGI_01278 Sequoiadendron giganteum HOM05D004486 ORTHO05D006329 4.0e-24 115.5 165 43.6
MELO3C027138.2 Cucumis melo HOM05D004486 ORTHO05D006329 5.2e-24 115.2 128 51.6
Glyma.20G244100 Glycine max HOM05D004486 ORTHO05D006329 1.5e-23 113.6 121 54.5
Zm00001eb062480 Zea mays HOM05D004486 ORTHO05D006329 3.4e-23 112.5 122 47.5
CARHR199920 Cardamine hirsuta HOM05D004486 ORTHO05D006329 6.4e-22 108.2 128 47.7
Rhsim12G0129400 Rhododendron simsii HOM05D004486 ORTHO05D006329 2.1e-20 103.2 133 50.4
Gohir.D05G318432 Gossypium hirsutum HOM05D004486 ORTHO05D047591 2.1e-17 93.2 46 95.7
Gorai.009G341300 Gossypium raimondii HOM05D004486 ORTHO05D047591 2.1e-17 93.2 46 95.7
CBR_g45218 Chara braunii HOM05D004486 ORTHO05D006329 2.8e-17 92.8 128 49.2
Mapoly0007s0135 Marchantia polymorpha HOM05D004486 ORTHO05D006329 4.0e-16 89.0 128 43.0
FAN01G2088 Fragaria x ananassa HOM05D004486 ORTHO05D006329 8.9e-16 87.8 95 52.6
AagrBONN_evm.TU.Sc2ySwM_362.2493 Anthoceros agrestis HOM05D004486 ORTHO05D006329 2.0e-15 86.7 124 42.7
SMO356G0749 Selaginella moellendorffii HOM05D004486 ORTHO05D006329 3.4e-15 85.9 127 44.1
Gohir.D10G095450 Gossypium hirsutum HOM05D015933 ORTHO05D218229 2.2e-14 83.2 53 88.7
Gohir.D10G145801 Gossypium hirsutum HOM05D015933 ORTHO05D218461 2.2e-14 83.2 53 88.7
Gohir.D11G096233 Gossypium hirsutum HOM05D015933 ORTHO05D216705 2.2e-14 83.2 53 88.7
AUR62036016 Chenopodium quinoa HOM05D004486 ORTHO05D006329 4.9e-14 82.0 85 55.3
Gohir.D01G109550 Gossypium hirsutum HOM05D015933 ORTHO05D217100 3.2e-13 79.3 53 86.8
Gohir.D12G132532 Gossypium hirsutum HOM05D015933 ORTHO05D216531 3.2e-13 79.3 53 86.8
Gohir.D13G051475 Gossypium hirsutum HOM05D015933 ORTHO05D217937 4.1e-13 79.0 53 84.9
Os03g0819100 Oryza sativa ssp. japonica HOM05D004486 ORTHO05D006329 1.6e-12 77.0 85 43.5
Gorai.004G044800 Gossypium raimondii HOM05D015933 ORTHO05D046919 1.3e-11 73.9 54 77.8
CDE07G0672 Ceratophyllum demersum HOM05D004486 ORTHO05D006329 5.1e-11 72.0 97 49.5
Gohir.D08G045933 Gossypium hirsutum HOM05D015933 ORTHO05D046919 5.1e-11 72.0 54 75.9
Gohir.D03G104600 Gossypium hirsutum HOM05D001166 ORTHO05D000992 1.1e-10 70.9 36 83.3
Gorai.003G110400 Gossypium raimondii HOM05D001166 ORTHO05D000992 3.3e-10 69.3 36 83.3
Gohir.D06G090500 Gossypium hirsutum HOM05D000144 ORTHO05D000392 4.3e-10 68.9 31 93.5
Gorai.009G426700 Gossypium raimondii HOM05D004486 ORTHO05D047388 7.3e-10 68.2 55 60.0
Gohir.D05G365432 Gossypium hirsutum HOM05D004486 ORTHO05D047388 1.2e-09 67.4 55 60.0


User provided reference genes

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