Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G153500 Gossypium raimondii HOM05D003653 ORTHO05D004249 4.6e-53 211.1 116 100.0
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 5.1e-44 181.0 106 91.5
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 7.4e-43 177.2 106 89.6
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 9.7e-43 176.8 106 89.6
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 9.1e-41 170.2 106 85.8
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 9.1e-41 170.2 106 86.8
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.2e-39 165.6 106 84.0
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.2e-39 165.6 106 84.0
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 2.9e-39 165.2 106 83.0
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 8.5e-39 163.7 106 84.0
Gohir.D13G136950 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.4e-38 162.9 91 97.8
Haze_06171 Corylus avellana HOM05D003653 ORTHO05D004249 2.5e-38 162.2 114 76.3
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 3.2e-38 161.8 106 79.2
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 1.8e-36 156.0 106 77.4
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 3.0e-36 155.2 109 75.2
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 3.9e-36 154.8 106 78.3
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 6.7e-36 154.1 106 77.4
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 8.8e-36 153.7 106 76.4
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 8.8e-36 153.7 106 76.4
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 8.8e-36 153.7 106 77.4
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.1e-35 153.3 106 76.4
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 1.5e-35 152.9 106 76.4
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 1.5e-35 152.9 106 76.4
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 2.0e-35 152.5 106 76.4
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 2.0e-35 152.5 106 76.4
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 2.0e-35 152.5 106 75.5
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 2.0e-35 152.5 106 76.4
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 2.0e-35 152.5 106 77.4
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 2.6e-35 152.1 106 76.4
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 3.3e-35 151.8 106 75.5
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 3.3e-35 151.8 106 75.5
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 3.3e-35 151.8 106 75.5
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 3.3e-35 151.8 106 75.5
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 3.3e-35 151.8 106 74.5
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 4.4e-35 151.4 106 76.4
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 4.4e-35 151.4 106 76.4
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 4.4e-35 151.4 106 76.4
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 5.7e-35 151.0 106 75.5
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 7.4e-35 150.6 106 75.5
Haze_16166 Corylus avellana HOM05D003653 ORTHO05D004249 9.7e-35 150.2 121 70.2
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 9.7e-35 150.2 106 75.5
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 1.3e-34 149.8 106 76.4
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 1.3e-34 149.8 106 75.5
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 1.3e-34 149.8 106 75.5
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 1.3e-34 149.8 106 75.5
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 1.3e-34 149.8 106 74.5
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 1.3e-34 149.8 106 74.5
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 1.7e-34 149.4 106 75.5
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 1.7e-34 149.4 106 76.4
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 1.7e-34 149.4 106 72.6
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 2.2e-34 149.1 106 75.5
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 2.2e-34 149.1 106 74.5
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 2.2e-34 149.1 106 76.4
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 3.7e-34 148.3 106 74.5
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 3.7e-34 148.3 106 75.5
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 4.8e-34 147.9 106 72.6
CSS0010075 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 6.3e-34 147.5 106 74.5
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 6.3e-34 147.5 106 76.4
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 6.3e-34 147.5 106 75.5
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 1.1e-33 146.7 106 74.5
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 1.1e-33 146.7 106 74.5
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 1.1e-33 146.7 106 74.5
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 1.8e-33 146.0 106 74.5
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 2.4e-33 145.6 106 72.6
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 4.1e-33 144.8 106 72.6
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 4.1e-33 144.8 106 74.5
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 7.0e-33 144.1 106 73.6
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 7.0e-33 144.1 106 73.6
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 7.0e-33 144.1 106 73.6
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 7.0e-33 144.1 106 73.6
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 9.1e-33 143.7 106 72.6
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 1.2e-32 143.3 102 74.5
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 1.2e-32 143.3 102 74.5
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 1.2e-32 143.3 102 74.5
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.2e-32 143.3 106 73.6
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.2e-32 143.3 106 73.6
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.5e-32 142.9 106 72.6
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 1.5e-32 142.9 106 72.6
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 1.5e-32 142.9 106 70.8
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 2.0e-32 142.5 105 73.3
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 2.0e-32 142.5 114 67.5
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 2.6e-32 142.1 106 71.7
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 2.6e-32 142.1 106 69.8
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 4.5e-32 141.4 106 68.9
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 4.5e-32 141.4 106 69.8
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 4.5e-32 141.4 106 72.6
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 5.9e-32 141.0 106 69.8
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 5.9e-32 141.0 106 69.8
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 5.9e-32 141.0 106 73.6
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 5.9e-32 141.0 106 72.6
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 7.7e-32 140.6 106 69.8
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 1.3e-31 139.8 106 67.9
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 1.7e-31 139.4 114 65.8
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 1.7e-31 139.4 106 71.7
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 2.2e-31 139.0 106 68.9
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 2.9e-31 138.7 106 67.9
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 2.9e-31 138.7 106 67.0
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 2.9e-31 138.7 106 72.6
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 3.8e-31 138.3 106 68.9
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 6.5e-31 137.5 106 68.9
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 6.5e-31 137.5 131 61.1
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 1.9e-30 136.0 106 68.9
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 1.9e-30 136.0 106 68.9
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 4.2e-30 134.8 99 72.7
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 5.5e-30 134.4 106 69.8
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 5.5e-30 134.4 106 65.1
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 9.4e-30 133.7 98 71.4
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 9.4e-30 133.7 106 67.9
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.2e-29 133.3 106 67.9
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 1.2e-29 133.3 106 67.9
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 1.2e-29 133.3 106 66.0
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.6e-29 132.9 106 69.8
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 1.6e-29 132.9 106 67.9
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 3.6e-29 131.7 106 65.1
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 4.7e-29 131.3 105 68.6
Oeu030621.1 Olea europaea HOM05D003653 ORTHO05D004249 3.0e-28 128.6 127 59.8
Haze_19192 Corylus avellana HOM05D003653 ORTHO05D004249 5.2e-28 127.9 132 58.3
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 1.5e-27 126.3 105 66.7
Actinidia26999 Actinidia chinensis HOM05D003653 ORTHO05D004249 2.2e-26 122.5 91 73.6
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 6.3e-26 120.9 89 71.9
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 4.5e-24 114.8 106 55.7
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 5.9e-24 114.4 106 55.7
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 6.5e-23 110.9 74 79.7
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 4.2e-22 108.2 76 75.0
QL02p096270 Quercus lobata HOM05D003653 ORTHO05D004249 1.8e-20 102.8 98 56.1
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 5.2e-20 101.3 106 53.8
TAR383G1054 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.5e-19 99.8 91 62.6
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 9.7e-19 97.1 74 66.2
Nitab4.5_0000055g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.7e-18 96.3 82 67.1
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 3.7e-18 95.1 83 61.4
CAN.G12730.1 Capsicum annuum HOM05D003653 ORTHO05D004249 4.5e-16 88.2 77 62.3
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 6.5e-15 84.3 126 41.3
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 4.2e-14 81.6 108 44.4
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 3.6e-13 78.6 92 52.2
VMungo1215G0910 Vigna mungo HOM05D003653 ORTHO05D004249 3.6e-13 78.6 108 47.2
SEGI_01409 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 3.0e-12 75.5 74 55.4
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 5.2e-12 74.7 105 42.9
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 2.6e-11 72.4 157 38.2
Lsat_1_v5_gn_7_58641 Lactuca sativa HOM05D003653 ORTHO05D004249 6.6e-07 57.8 48 66.7
Lsat_1_v5_gn_2_82101 Lactuca sativa HOM05D003653 ORTHO05D004249 3.3e-06 55.5 48 64.6
Lsat_1_v5_gn_2_26321 Lactuca sativa HOM05D003653 ORTHO05D004249 4.2e-06 55.1 48 64.6
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 4.2e-06 55.1 39 74.4


User provided reference genes

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