Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.1e-181 639.8 320 100.0
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.5e-181 638.6 320 99.7
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.5e-178 627.1 320 97.8
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 6.3e-177 624.0 320 97.2
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.7e-175 618.6 320 96.6
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.3e-171 605.5 324 94.1
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.6e-156 556.2 320 87.5
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 1.8e-155 552.7 320 85.6
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 3.9e-150 535.0 320 83.4
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 4.3e-125 451.8 327 69.4
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 3.0e-118 429.1 327 67.0
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 5.1e-118 428.3 327 66.7
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 2.5e-117 426.0 327 64.2
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 2.1e-116 422.9 328 66.8
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.8e-115 419.9 324 64.5
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 2.0e-114 416.4 326 65.0
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 4.5e-114 415.2 328 64.3
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 4.9e-113 411.8 326 63.8
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 6.4e-113 411.4 327 65.4
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 2.4e-112 409.5 327 63.9
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 9.3e-112 407.5 326 63.5
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 9.3e-112 407.5 325 63.7
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.3e-110 403.7 327 62.7
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 2.3e-110 402.9 327 62.4
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.3e-109 399.1 325 63.1
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.3e-109 399.1 334 62.9
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 3.3e-109 399.1 325 62.5
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 4.3e-109 398.7 325 62.8
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 9.6e-109 397.5 294 67.0
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.3e-108 397.1 325 62.8
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.6e-108 396.7 322 59.9
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 3.7e-108 395.6 337 59.9
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 4.8e-108 395.2 322 62.7
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 8.1e-108 394.4 339 61.7
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.1e-107 394.0 324 62.3
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.8e-107 393.3 324 62.3
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 2.0e-106 389.8 325 60.6
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 3.4e-106 389.0 329 62.6
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.3e-105 387.1 327 61.2
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.7e-105 386.7 318 64.2
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 4.2e-104 382.1 324 60.5
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.6e-103 380.2 323 59.1
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 6.0e-103 378.3 318 61.0
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.0e-102 377.5 329 57.1
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.5e-101 373.6 326 60.4
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 2.5e-101 372.9 327 60.2
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 2.5e-101 372.9 325 60.3
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.7e-100 369.0 294 64.6
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 4.8e-100 368.6 353 55.5
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 6.3e-100 368.2 279 65.6
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 8.2e-100 367.9 329 58.1
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 8.2e-100 367.9 325 57.8
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.4e-99 366.3 320 58.8
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 3.1e-99 365.9 323 56.7
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 5.3e-99 365.2 332 57.5
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 6.9e-99 364.8 338 56.8
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 3.4e-98 362.5 305 61.3
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.0e-97 358.6 298 62.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 8.5e-97 357.8 321 57.6
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.1e-96 357.5 304 60.5
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.9e-96 356.7 265 65.3
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.2e-96 355.9 323 58.5
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.1e-95 353.2 325 56.9
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 7.9e-95 351.3 330 55.5
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.0e-94 349.4 329 55.0
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 5.1e-94 348.6 325 54.5
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 6.7e-94 348.2 325 54.8
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.5e-93 347.1 325 56.0
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.6e-92 343.6 326 55.5
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.8e-92 342.8 318 54.7
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.8e-92 342.8 325 55.7
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 4.8e-92 342.0 324 54.9
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 8.2e-92 341.3 325 55.1
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.4e-91 339.7 276 63.0
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 4.1e-91 339.0 293 57.0
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 4.1e-91 339.0 322 53.7
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 5.3e-91 338.6 313 55.0
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 5.3e-91 338.6 324 54.0
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 1.2e-90 337.4 315 55.2
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.0e-90 336.7 296 58.1
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.6e-90 336.3 333 53.5
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.4e-90 335.9 295 60.0
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 4.5e-90 335.5 330 53.0
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.2e-89 333.2 328 55.5
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.1e-88 330.9 325 52.6
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 9.4e-88 327.8 336 53.0
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.1e-87 326.6 325 55.1
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.5e-85 320.5 293 56.3
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 2.0e-85 320.1 249 66.7
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.4e-85 318.9 328 51.8
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 9.7e-85 317.8 290 56.6
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 3.4e-82 309.3 214 67.3
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.2e-79 300.8 350 49.1
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 3.6e-79 299.3 336 47.9
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.8e-78 297.0 237 61.2
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 6.7e-78 295.0 345 49.3
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.1e-77 294.3 309 52.4
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 2.6e-77 293.1 345 48.4
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 4.4e-77 292.4 267 54.7
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 4.8e-76 288.9 345 49.0
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 3.1e-75 286.2 253 56.9
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 6.5e-73 278.5 322 47.8
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.2e-71 274.2 275 50.9
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.0e-70 269.6 227 60.8
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 3.0e-70 269.6 227 60.8
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.8e-67 260.4 273 52.4
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 3.1e-67 259.6 214 59.3
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 4.5e-66 255.8 179 73.7
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.9e-66 255.4 320 47.8
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.2e-64 249.6 217 56.2
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 5.5e-64 248.8 291 50.2
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 3.6e-63 246.1 270 47.0
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 8.8e-62 241.5 245 54.7
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.2e-61 241.1 287 45.3
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.5e-61 240.7 325 42.8
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 6.3e-60 235.3 243 47.7
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.4e-59 234.2 174 66.1
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.9e-56 223.8 270 44.1
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 2.3e-54 216.9 273 42.5
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.8e-51 207.2 247 47.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 5.4e-51 205.7 208 53.4
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.3e-49 201.1 122 77.0
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.1e-48 198.0 244 48.0
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.8e-46 188.7 277 40.1
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 9.8e-45 184.9 237 43.9
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.1e-43 181.4 263 40.7
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.1e-43 181.4 213 48.8
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 3.5e-42 176.4 153 57.5
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.5e-42 176.4 130 64.6
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.3e-38 163.7 180 50.6
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 5.2e-38 162.5 159 55.3
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.0e-34 149.1 179 46.4
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.0e-33 148.3 148 52.0
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.0e-33 148.3 248 36.7
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.9e-32 144.1 152 54.6
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 5.8e-29 132.5 154 48.7
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 9.9e-29 131.7 158 44.9
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 5.4e-27 125.9 282 29.4
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 7.8e-26 122.1 88 64.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 3.4e-21 106.7 181 37.0
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 6.0e-18 95.9 174 31.0
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 4.7e-15 86.3 62 62.9
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 4.9e-12 76.3 56 64.3
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.7e-10 70.5 100 41.0
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 5.1e-09 66.2 193 31.1
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 9.0e-06 55.5 31 74.2


User provided reference genes

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