Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.7e-221 772.3 379 100.0
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 3.9e-218 761.1 379 99.2
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.0e-213 746.5 379 97.4
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 8.8e-194 680.2 379 89.2
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 2.9e-181 638.6 345 89.9
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.8e-178 629.4 385 82.6
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 3.0e-178 628.6 377 82.0
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.2e-177 626.7 377 80.4
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.1e-175 620.2 377 80.1
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 1.1e-175 620.2 378 79.9
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 3.1e-175 618.6 381 80.3
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 4.1e-175 618.2 376 79.5
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 5.4e-175 617.8 379 80.2
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.0e-174 615.9 378 79.4
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 2.7e-174 615.5 381 80.1
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 4.5e-174 614.8 378 81.0
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 7.8e-174 614.0 403 75.9
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.7e-173 612.8 377 79.8
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 2.9e-173 612.1 379 79.9
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 3.8e-173 611.7 380 78.9
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 8.6e-173 610.5 321 91.0
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 1.1e-172 610.1 379 78.4
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.9e-172 609.4 379 78.4
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 5.6e-172 607.8 378 78.0
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 9.5e-172 607.1 385 78.7
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.8e-171 605.5 379 77.8
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.8e-171 605.5 381 77.7
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 3.6e-171 605.1 378 78.0
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 4.7e-171 604.7 379 78.6
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.7e-171 604.7 377 78.0
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.3e-170 602.4 393 75.6
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.0e-169 599.4 380 78.2
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 3.4e-169 598.6 382 78.8
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.3e-168 596.7 379 77.8
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 2.2e-168 595.9 380 77.6
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 2.9e-168 595.5 378 77.0
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 4.9e-168 594.7 401 73.6
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.1e-167 593.6 371 77.9
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 3.2e-167 592.0 378 75.9
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.1e-167 591.7 377 77.2
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 7.0e-167 590.9 379 77.0
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 7.0e-167 590.9 382 76.2
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.6e-166 589.7 381 76.1
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 2.7e-166 589.0 373 75.6
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 5.9e-166 587.8 383 75.7
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.0e-165 585.5 377 75.3
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 5.0e-165 584.7 379 74.9
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 5.0e-165 584.7 378 76.2
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.5e-164 582.4 379 74.4
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 7.3e-164 580.9 397 73.8
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 3.6e-163 578.6 380 75.0
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 3.6e-163 578.6 379 75.5
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.4e-162 576.6 378 75.1
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.8e-162 576.2 379 75.2
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.3e-162 575.9 379 73.4
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 2.3e-162 575.9 374 76.2
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 8.9e-162 573.9 379 72.8
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-161 573.5 379 73.6
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 1.2e-161 573.5 379 73.6
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.5e-161 573.2 373 74.3
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 3.4e-161 572.0 377 75.1
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 4.4e-161 571.6 320 84.7
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 4.4e-161 571.6 378 75.7
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 5.8e-161 571.2 384 73.4
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 7.5e-161 570.9 379 73.4
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.7e-160 569.7 381 73.0
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 6.4e-160 567.8 379 73.1
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 6.4e-160 567.8 379 73.1
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 8.3e-160 567.4 382 71.2
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.1e-159 567.0 380 74.7
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 1.9e-159 566.2 379 72.0
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 2.4e-159 565.8 378 72.8
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 2.4e-159 565.8 330 80.6
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 3.2e-159 565.5 380 73.9
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 3.2e-159 565.5 379 74.7
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 4.6e-158 561.6 379 72.0
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.3e-157 560.1 383 72.3
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 3.0e-157 558.9 379 72.3
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 6.6e-157 557.8 381 73.2
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 8.6e-157 557.4 350 78.9
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 8.6e-157 557.4 308 86.0
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 5.6e-156 554.7 319 82.8
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 7.3e-156 554.3 383 71.3
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.2e-155 553.5 378 72.5
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.6e-155 553.1 383 71.3
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.8e-155 552.4 382 70.9
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 6.2e-155 551.2 317 79.8
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-154 550.4 374 70.9
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.1e-154 550.4 376 70.5
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-154 549.7 382 70.4
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.8e-154 549.7 340 78.2
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-154 549.3 382 70.7
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 6.8e-154 547.7 329 78.1
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 6.8e-154 547.7 378 71.4
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 8.9e-154 547.4 416 68.8
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 4.4e-153 545.0 347 72.9
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 5.8e-153 544.7 319 80.6
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 7.5e-153 544.3 383 70.0
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 1.7e-152 543.1 408 66.7
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.1e-151 540.4 319 79.9
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.4e-151 539.3 381 69.8
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 7.1e-151 537.7 320 78.4
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 6.0e-150 534.6 384 69.5
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.8e-150 534.3 309 79.9
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 1.3e-149 533.5 382 68.3
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.7e-149 533.1 334 75.1
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.0e-149 532.3 378 68.0
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 4.7e-147 525.0 377 69.2
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 6.2e-147 524.6 378 69.0
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.9e-144 515.8 330 74.2
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.8e-144 515.4 317 74.8
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 4.9e-144 515.0 377 67.9
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 3.2e-143 512.3 350 74.9
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.6e-142 510.0 320 75.6
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 2.1e-142 509.6 308 75.0
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 2.1e-142 509.6 305 76.1
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 4.6e-142 508.4 322 73.3
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 5.6e-140 501.5 347 72.6
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 4.7e-139 498.4 375 66.4
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 6.2e-139 498.0 320 73.4
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 4.4e-137 491.9 350 73.1
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 2.7e-134 482.6 349 71.3
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.5e-134 482.3 325 74.2
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 4.6e-134 481.9 324 72.5
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 2.4e-130 469.5 307 71.7
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 9.3e-127 457.6 294 70.7
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-126 457.2 379 62.8
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 7.9e-126 454.5 258 81.0
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 7.9e-126 454.5 258 81.0
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 3.0e-125 452.6 324 72.2
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 2.5e-124 449.5 242 88.8
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 8.4e-120 434.5 306 63.4
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 8.4e-120 434.5 290 73.8
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 4.3e-116 422.2 326 60.1
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 6.9e-114 414.8 303 64.7
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 2.6e-113 412.9 330 58.8
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 2.7e-110 402.9 260 78.1
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.4e-106 390.6 378 54.8
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.6e-105 386.3 234 76.5
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 7.6e-105 384.8 332 55.7
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 8.5e-104 381.3 300 61.0
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.5e-103 379.8 263 72.2
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 1.1e-98 364.4 234 77.4
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 4.5e-97 359.0 197 85.3
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.2e-95 352.4 197 83.8
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 6.1e-94 348.6 280 62.5
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 7.4e-92 341.7 217 77.0
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 2.5e-79 300.1 221 71.5
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 3.7e-75 286.2 344 46.5
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 5.5e-71 272.3 359 42.3
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 2.1e-70 270.4 219 63.0
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 6.8e-69 265.4 300 48.0
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 2.8e-67 260.0 302 45.0
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 7.7e-65 251.9 306 44.8
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 5.2e-53 212.6 153 71.2
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.2e-52 211.5 182 63.2
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.4e-50 204.5 117 80.3
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 7.0e-42 175.6 290 39.0
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-36 158.3 92 83.7
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-36 158.3 92 83.7
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.0e-36 157.5 131 64.1
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-35 154.8 92 81.5
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 1.7e-35 154.5 130 63.8
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.9e-35 153.7 92 82.6
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 3.7e-35 153.3 130 63.1
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 3.0e-32 143.7 96 77.1
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 8.6e-32 142.1 77 87.0
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 2.2e-27 127.5 74 77.0
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 3.8e-27 126.7 63 92.1
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 1.9e-26 124.4 340 28.8
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.9e-23 114.4 132 52.3
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 2.5e-23 114.0 92 67.4
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.5e-23 114.0 63 79.4
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 2.1e-22 110.9 99 58.6
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 8.1e-22 109.0 117 51.3
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 1.4e-18 98.2 61 72.1
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.1e-15 88.6 51 78.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 7.3e-15 85.9 245 30.2
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 3.4e-12 77.0 75 52.0
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 7.6e-12 75.9 45 77.8
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 2.2e-11 74.3 42 78.6
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.6e-09 68.2 42 69.0
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.6e-09 68.2 42 69.0
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 3.3e-07 60.5 34 82.4
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 7.4e-07 59.3 39 66.7


User provided reference genes

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