Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G091700 Gossypium raimondii HOM05D034412 ORTHO05D003249 8.3e-177 624.0 420 100.0
Gohir.D13G080100 Gossypium hirsutum HOM05D034412 ORTHO05D003249 6.2e-172 607.8 420 98.1
Gohir.A13G080300 Gossypium hirsutum HOM05D034412 ORTHO05D003249 3.3e-117 426.0 349 90.0
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.5e-45 188.0 323 51.7
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 2.5e-40 170.6 311 52.4
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.1e-34 151.0 301 49.5
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 3.5e-34 150.2 301 49.5
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 6.0e-34 149.4 301 49.5
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 1.8e-30 137.9 365 34.5
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 2.0e-29 134.4 353 34.0
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 2.6e-29 134.0 356 32.6
Dinv16709 Davidia involucrata HOM05D002953 ORTHO05D003249 1.7e-28 131.3 266 38.7
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 2.3e-25 120.9 357 32.8
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 3.0e-25 120.6 367 33.0
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.5e-24 118.2 352 31.8
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 1.9e-24 117.9 375 32.0
Prupe.1G282700 Prunus persica HOM05D002953 ORTHO05D003249 1.3e-23 115.2 350 49.1
Haze_11930 Corylus avellana HOM05D002953 ORTHO05D003249 1.4e-22 111.7 358 34.6
TAR371G0440 Trochodendron aralioides HOM05D002953 ORTHO05D003249 2.6e-21 107.5 364 30.2
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 9.3e-19 99.0 376 35.1
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 1.2e-18 98.6 353 29.5
PGR102G2110 Punica granatum HOM05D002953 ORTHO05D003249 4.6e-18 96.7 360 32.8
FvH4_4g30432 Fragaria vesca HOM05D002953 ORTHO05D003249 6.0e-18 96.3 272 32.7
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 2.3e-17 94.4 344 29.4
RcHm_v2.0_Chr4g0438751 Rosa chinensis HOM05D002953 ORTHO05D003249 3.9e-17 93.6 272 42.3
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 1.1e-16 92.0 354 31.1
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 3.3e-16 90.5 285 27.0
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 3.3e-16 90.5 358 26.5
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 5.6e-16 89.7 287 32.8
FAN12G1055 Fragaria x ananassa HOM05D002953 ORTHO05D003249 7.4e-16 89.4 287 33.8
DCAR_007182 Daucus carota HOM05D002953 ORTHO05D003249 9.6e-16 89.0 350 43.7
CiPaw.06G090600 Carya illinoinensis HOM05D002953 ORTHO05D003249 2.1e-15 87.8 312 38.5
Hma1.2p1_0357F.1_g134470 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 6.2e-15 86.3 356 41.6
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.8e-14 84.7 351 27.1
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 2.4e-14 84.3 363 25.9
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 3.1e-14 84.0 352 31.2
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 6.9e-14 82.8 366 25.7
PSO017G2547 Papaver somniferum HOM05D002953 ORTHO05D003249 3.4e-13 80.5 368 35.3
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 9.9e-13 79.0 360 25.0
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 1.3e-12 78.6 349 25.8
GSVIVG01012183001 Vitis vinifera HOM05D002953 ORTHO05D003249 3.8e-12 77.0 394 34.8
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 4.9e-12 76.6 368 29.6
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 8.4e-12 75.9 323 31.3
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 8.4e-12 75.9 368 33.2
SalBow2G1905 Salvia bowleyana HOM05D002953 ORTHO05D003249 1.1e-11 75.5 370 37.6
Cc11_g12310 Coffea canephora HOM05D002953 ORTHO05D003249 2.5e-11 74.3 365 32.9
SalBow2G2783 Salvia bowleyana HOM05D002953 ORTHO05D003249 2.5e-11 74.3 370 37.3
Carub.0001s1362 Capsella rubella HOM05D002953 ORTHO05D003249 7.1e-11 72.8 365 31.5
Lalb_Chr16g0385611 Lupinus albus HOM05D002953 ORTHO05D003249 1.2e-10 72.0 367 41.4
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 1.2e-10 72.0 334 27.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 3.5e-10 70.5 361 32.7
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 3.5e-10 70.5 369 25.5
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 6.0e-10 69.7 367 28.1
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 2.3e-09 67.8 347 25.9
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 3.0e-09 67.4 384 27.9
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 3.9e-09 67.0 303 25.7
BcaB03g13124 Brassica carinata HOM05D002953 ORTHO05D003249 1.1e-08 65.5 362 30.7
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 1.1e-08 65.5 377 29.4
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 1.5e-08 65.1 357 26.1
HanXRQChr12g0375351 Helianthus annuus HOM05D002953 ORTHO05D003249 1.9e-08 64.7 366 29.2
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 1.9e-08 64.7 351 32.5
CAN.G1340.5 Capsicum annuum HOM05D002953 ORTHO05D003249 2.5e-08 64.3 394 40.6
ClCG05G023850 Citrullus lanatus HOM05D002953 ORTHO05D003249 2.5e-08 64.3 366 24.3
Peaxi162Scf00187g01311 Petunia axillaris HOM05D002953 ORTHO05D003249 2.5e-08 64.3 336 25.6
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 3.3e-08 63.9 362 26.8
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 3.3e-08 63.9 360 28.9
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 4.3e-08 63.5 362 26.8
CsaV3_5G033170 Cucumis sativus L. HOM05D000954 ORTHO05D000822 4.3e-08 63.5 364 28.0
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 9.6e-08 62.4 395 26.3
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 1.3e-07 62.0 395 26.1
Migut.L01214 Erythranthe guttata HOM05D002953 ORTHO05D003249 2.1e-07 61.2 351 37.0
A06p09930 Brassica napus HOM05D002953 ORTHO05D003249 3.7e-07 60.5 365 34.8
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 3.7e-07 60.5 356 26.4
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 3.7e-07 60.5 399 26.1
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 3.7e-07 60.5 197 31.5
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 4.8e-07 60.1 356 22.2
BraA06t24181Z Brassica rapa HOM05D002953 ORTHO05D003249 6.2e-07 59.7 365 32.9
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 6.2e-07 59.7 326 26.1
Sed0002075 Sechium edule HOM05D002953 ORTHO05D003249 8.2e-07 59.3 366 23.5
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 1.4e-06 58.5 362 25.7
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 2.4e-06 57.8 300 26.0
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 4.0e-06 57.0 342 23.4
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 4.0e-06 57.0 362 27.6
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 4.0e-06 57.0 352 27.0
C05p11700 Brassica napus HOM05D002953 ORTHO05D003249 9.0e-06 55.8 351 28.5
BolC5t29917H Brassica oleracea HOM05D002953 ORTHO05D003249 9.0e-06 55.8 351 28.8
Psat2g127880 Pisum sativum HOM05D002953 ORTHO05D003249 9.0e-06 55.8 280 26.8


User provided reference genes

Program Settings