Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G082600 Gossypium raimondii HOM05D001692 ORTHO05D005276 3.8e-47 191.0 89 100.0
Gohir.D03G015800 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.9e-46 188.7 88 98.9
Gohir.D06G025300 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.9e-46 188.7 88 98.9
Gohir.D11G187900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.9e-46 188.7 88 98.9
Peaxi162Scf00111g00115 Petunia axillaris HOM05D001692 ORTHO05D005276 1.7e-42 175.6 88 88.6
Nitab4.5_0009792g0010 Nicotiana tabacum HOM05D001692 ORTHO05D005276 2.8e-42 174.9 88 87.5
Gohir.A01G044100 Gossypium hirsutum HOM05D001692 ORTHO05D005276 3.7e-42 174.5 102 83.3
Gorai.006G053200 Gossypium raimondii HOM05D001692 ORTHO05D005276 4.8e-42 174.1 102 82.4
MBI07_g26365_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 6.3e-42 173.7 87 88.5
Gohir.D01G034901 Gossypium hirsutum HOM05D001692 ORTHO05D005276 1.4e-41 172.6 102 82.4
Gorai.005G073200 Gossypium raimondii HOM05D001692 ORTHO05D005276 2.4e-41 171.8 102 81.4
Gorai.002G043100 Gossypium raimondii HOM05D001692 ORTHO05D005276 4.1e-41 171.0 103 82.5
Thecc.07G141800 Theobroma cacao HOM05D001692 ORTHO05D005276 4.1e-41 171.0 101 81.2
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 5.3e-41 170.6 101 81.2
QL08p044937 Quercus lobata HOM05D001692 ORTHO05D005276 4.5e-40 167.5 102 76.5
Solyc07g061960.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 7.7e-40 166.8 102 76.5
Peaxi162Scf00000g05119 Petunia axillaris HOM05D001692 ORTHO05D005276 1.0e-39 166.4 102 77.5
DCAR_019628 Daucus carota HOM05D001692 ORTHO05D005276 1.3e-39 166.0 87 86.2
Sopen07g030230 Solanum pennellii HOM05D001692 ORTHO05D005276 1.3e-39 166.0 102 76.5
Medtr2g072190 Medicago truncatula HOM05D001692 ORTHO05D005276 2.2e-39 165.2 102 76.5
Nitab4.5_0006409g0020 Nicotiana tabacum HOM05D001692 ORTHO05D005276 2.2e-39 165.2 88 81.8
Prupe.3G177200 Prunus persica HOM05D001692 ORTHO05D005276 2.2e-39 165.2 102 76.5
Solyc12g011430.3 Solanum lycopersicum HOM05D001692 ORTHO05D005276 2.2e-39 165.2 102 75.5
GSVIVG01020841001 Vitis vinifera HOM05D001692 ORTHO05D005276 2.9e-39 164.9 102 75.5
HanXRQChr10g0305671 Helianthus annuus HOM05D001692 ORTHO05D005276 3.8e-39 164.5 102 75.5
CSS0018182 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 5.0e-39 164.1 102 75.5
CSS0026037 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 5.0e-39 164.1 102 75.5
TWI59G0785 Tripterygium wilfordii HOM05D001692 ORTHO05D005276 5.0e-39 164.1 101 76.2
CANSAT64G1255 Cannabis sativa HOM05D001692 ORTHO05D005276 8.5e-39 163.3 101 75.2
SalBow1G5551 Salvia bowleyana HOM05D001692 ORTHO05D005276 8.5e-39 163.3 101 77.2
TPR.G19262 Trifolium pratense HOM05D001692 ORTHO05D005276 8.5e-39 163.3 102 75.5
Aqoxy1G01726 Aquilegia oxysepala HOM05D001692 ORTHO05D005276 1.4e-38 162.5 100 75.0
AUR62019708 Chenopodium quinoa HOM05D001692 ORTHO05D005276 1.4e-38 162.5 102 75.5
Duzib187G0194 Durio zibethinus HOM05D001692 ORTHO05D005276 1.4e-38 162.5 101 77.2
Potri.001G380100 Populus trichocarpa HOM05D001692 ORTHO05D005276 1.4e-38 162.5 101 77.2
PGSC0003DMG400008562 Solanum tuberosum HOM05D001692 ORTHO05D005276 1.4e-38 162.5 102 74.5
MSTRG.6728 Avicennia marina HOM05D001692 ORTHO05D005276 1.9e-38 162.2 102 74.5
Sopen12g006780 Solanum pennellii HOM05D001692 ORTHO05D005276 1.9e-38 162.2 102 74.5
Ciclev10021343m.g Citrus clementina HOM05D001692 ORTHO05D005276 2.5e-38 161.8 102 73.5
MD17G1135300 Malus domestica HOM05D001692 ORTHO05D005276 2.5e-38 161.8 102 74.5
Oeu001313.1 Olea europaea HOM05D001692 ORTHO05D005276 2.5e-38 161.8 102 75.5
SalBow8G1908 Salvia bowleyana HOM05D001692 ORTHO05D005276 2.5e-38 161.8 101 76.2
GSVIVG01000481001 Vitis vinifera HOM05D001692 ORTHO05D005276 2.5e-38 161.8 102 73.5
Cc05_g10460 Coffea canephora HOM05D001692 ORTHO05D005276 3.2e-38 161.4 97 78.4
Dinv13329 Davidia involucrata HOM05D001692 ORTHO05D005276 3.2e-38 161.4 102 75.5
Migut.M00626 Erythranthe guttata HOM05D001692 ORTHO05D005276 3.2e-38 161.4 101 77.2
SGA_v2.0_scaffold70G23592 Striga asiatica HOM05D001692 ORTHO05D005276 3.2e-38 161.4 101 75.2
CSS0017658 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 4.2e-38 161.0 102 75.5
CANSAT56G0439 Cannabis sativa HOM05D001692 ORTHO05D005276 4.2e-38 161.0 102 75.5
Gohir.D04G055900 Gossypium hirsutum HOM05D001692 ORTHO05D005276 4.2e-38 161.0 102 78.4
MD09G1149000 Malus domestica HOM05D001692 ORTHO05D005276 4.2e-38 161.0 102 73.5
Sabra16G0250400 Salix brachista HOM05D001692 ORTHO05D005276 4.2e-38 161.0 105 73.3
Sc03g0010860 Simmondsia chinensis HOM05D001692 ORTHO05D005276 4.2e-38 161.0 101 76.2
Ca_03405_v3 Cicer arietinum L. HOM05D001692 ORTHO05D005276 5.5e-38 160.6 102 74.5
CiPaw.03G191700 Carya illinoinensis HOM05D001692 ORTHO05D005276 7.2e-38 160.2 101 75.2
FvH4_6g38610 Fragaria vesca HOM05D001692 ORTHO05D005276 7.2e-38 160.2 102 73.5
Lsat_1_v5_gn_5_126060 Lactuca sativa HOM05D001692 ORTHO05D005276 7.2e-38 160.2 98 75.5
AUR62037988 Chenopodium quinoa HOM05D001692 ORTHO05D005276 9.4e-38 159.8 102 74.5
THA.LOC104822594 Tarenaya hassleriana HOM05D001692 ORTHO05D005276 9.4e-38 159.8 102 75.5
Lj3g0022741 Lotus japonicus HOM05D001692 ORTHO05D005276 1.2e-37 159.5 101 73.3
RcHm_v2.0_Chr2g0152061 Rosa chinensis HOM05D001692 ORTHO05D005276 1.2e-37 159.5 102 73.5
FAN02G2152 Fragaria x ananassa HOM05D001692 ORTHO05D005276 1.6e-37 159.1 105 71.4
LjContig00272g0024686 Lotus japonicus HOM05D001692 ORTHO05D005276 1.6e-37 159.1 101 74.3
PSO675G6085 Papaver somniferum HOM05D001692 ORTHO05D005276 1.6e-37 159.1 102 72.5
MSTRG.15020 Avicennia marina HOM05D001692 ORTHO05D005276 2.1e-37 158.7 102 74.5
COL.COLO4_08889 Corchorus olitorius HOM05D001692 ORTHO05D005276 2.1e-37 158.7 87 81.6
FAN05G1140 Fragaria x ananassa HOM05D001692 ORTHO05D005276 2.1e-37 158.7 105 70.5
Potri.005G204800 Populus trichocarpa HOM05D001692 ORTHO05D005276 2.1e-37 158.7 101 74.3
Manes.02G089400 Manihot esculenta HOM05D001692 ORTHO05D005276 2.7e-37 158.3 101 75.2
PSO541G6360 Papaver somniferum HOM05D001692 ORTHO05D005276 2.7e-37 158.3 102 72.5
CSS0030572 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D005276 3.6e-37 157.9 102 73.5
ECA234G1166 Erigeron canadensis HOM05D001692 ORTHO05D005276 4.7e-37 157.5 102 71.6
Sp1g40080 Schrenkiella parvula HOM05D001692 ORTHO05D005276 4.7e-37 157.5 101 74.3
EL10Ac4g08464 Beta vulgaris HOM05D001692 ORTHO05D005276 6.1e-37 157.1 102 74.5
BcaB04g17072 Brassica carinata HOM05D001692 ORTHO05D005276 6.1e-37 157.1 101 73.3
CsaV3_4G032640 Cucumis sativus L. HOM05D001692 ORTHO05D005276 6.1e-37 157.1 101 75.2
Eucgr.A02020 Eucalyptus grandis HOM05D001692 ORTHO05D005276 6.1e-37 157.1 101 72.3
PGSC0003DMG400007053 Solanum tuberosum HOM05D001692 ORTHO05D005276 6.1e-37 157.1 98 75.5
AT1G53580 Arabidopsis thaliana HOM05D001692 ORTHO05D005276 1.0e-36 156.4 101 73.3
arahy.Tifrunner.gnm1.ann1.E3Z39S Arachis hypogaea HOM05D001692 ORTHO05D005276 1.0e-36 156.4 101 75.2
Eucgr.L01848 Eucalyptus grandis HOM05D001692 ORTHO05D005276 1.0e-36 156.4 101 73.3
Lalb_Chr01g0016151 Lupinus albus HOM05D001692 ORTHO05D005276 1.0e-36 156.4 102 71.6
TAR627G0628 Trochodendron aralioides HOM05D001692 ORTHO05D005276 1.0e-36 156.4 101 73.3
MBI10_g02223_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 1.4e-36 156.0 88 81.8
MBI10_g05866_MAGBIO Magnolia biondii HOM05D001692 ORTHO05D005276 1.4e-36 156.0 88 81.8
Nn3g20715 Nelumbo nucifera HOM05D001692 ORTHO05D005276 1.4e-36 156.0 102 71.6
PGR042G3356 Punica granatum HOM05D001692 ORTHO05D005276 1.4e-36 156.0 101 73.3
BcaC01g01401 Brassica carinata HOM05D001692 ORTHO05D005276 1.8e-36 155.6 101 73.3
ClCG11G017000 Citrullus lanatus HOM05D001692 ORTHO05D005276 1.8e-36 155.6 100 75.0
Eucgr.F01401 Eucalyptus grandis HOM05D001692 ORTHO05D005276 2.3e-36 155.2 101 72.3
CAN.G375.74 Capsicum annuum HOM05D001692 ORTHO05D005276 3.0e-36 154.8 99 73.7
Cpa.g.sc77.83 Carica papaya HOM05D001692 ORTHO05D005276 3.9e-36 154.5 102 72.5
Lj8A144G64 Lonicera japonica HOM05D001692 ORTHO05D005276 3.9e-36 154.5 117 64.1
BcaB07g33320 Brassica carinata HOM05D001692 ORTHO05D005276 5.2e-36 154.1 101 72.3
C03p91630 Brassica napus HOM05D001692 ORTHO05D005276 5.2e-36 154.1 110 68.2
BolC3t21480H Brassica oleracea HOM05D001692 ORTHO05D005276 5.2e-36 154.1 110 68.2
BcaC08g43540 Brassica carinata HOM05D001692 ORTHO05D005276 6.7e-36 153.7 101 72.3
A06p00940 Brassica napus HOM05D001692 ORTHO05D005276 6.7e-36 153.7 97 74.2
Pp3c9_13000 Physcomitrium patens HOM05D001692 ORTHO05D005276 6.7e-36 153.7 86 79.1
AL1G62170 Arabidopsis lyrata HOM05D001692 ORTHO05D005276 8.8e-36 153.3 101 72.3
Thhalv10011701m.g Eutrema salsugineum HOM05D001692 ORTHO05D005276 8.8e-36 153.3 101 72.3
Psat1g009000 Pisum sativum HOM05D001692 ORTHO05D005276 8.8e-36 153.3 96 75.0
VMungo1080G0123 Vigna mungo HOM05D001692 ORTHO05D005276 1.1e-35 152.9 101 72.3
ATR0585G035 Amborella trichopoda HOM05D001692 ORTHO05D005276 1.5e-35 152.5 102 69.6
BraA08t32202Z Brassica rapa HOM05D001692 ORTHO05D005276 1.5e-35 152.5 108 68.5
FAN14G4917 Fragaria x ananassa HOM05D001692 ORTHO05D005276 1.5e-35 152.5 122 61.5
Carub.0001s4279 Capsella rubella HOM05D001692 ORTHO05D005276 2.0e-35 152.1 101 72.3
CARHR043840 Cardamine hirsuta HOM05D001692 ORTHO05D005276 2.0e-35 152.1 101 73.3
Glyma.13G261400 Glycine max HOM05D001692 ORTHO05D005276 2.0e-35 152.1 101 71.3
A08p01500 Brassica napus HOM05D001692 ORTHO05D005276 3.3e-35 151.4 108 67.6
FAN09G0561 Fragaria x ananassa HOM05D001692 ORTHO05D005276 3.3e-35 151.4 105 67.6
Sed0008182 Sechium edule HOM05D001692 ORTHO05D005276 3.3e-35 151.4 101 73.3
C06p09290 Brassica napus HOM05D001692 ORTHO05D005276 4.4e-35 151.0 108 67.6
BolC6t36007H Brassica oleracea HOM05D001692 ORTHO05D005276 4.4e-35 151.0 108 67.6
SEGI_02719 Sequoiadendron giganteum HOM05D001692 ORTHO05D005276 4.4e-35 151.0 101 71.3
Os01g0667200 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D005276 1.3e-34 149.4 101 71.3
Dinv26682 Davidia involucrata HOM05D001692 ORTHO05D005276 1.7e-34 149.1 98 73.5
CDE09G1013 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 2.8e-34 148.3 101 70.3
Phvul.005G062700 Phaseolus vulgaris HOM05D001692 ORTHO05D005276 2.8e-34 148.3 100 70.0
Sed0012666 Sechium edule HOM05D001692 ORTHO05D005276 6.3e-34 147.1 100 71.0
HPP92_009985 Vanilla planifolia HOM05D001692 ORTHO05D005276 6.3e-34 147.1 100 71.0
Haze_13535 Corylus avellana HOM05D001692 ORTHO05D005276 8.2e-34 146.7 142 52.8
Nn4g26535 Nelumbo nucifera HOM05D001692 ORTHO05D005276 1.1e-33 146.4 101 69.3
Nitab4.5_0005492g0050 Nicotiana tabacum HOM05D001692 ORTHO05D005276 1.4e-33 146.0 75 84.0
Mapoly0002s0284 Marchantia polymorpha HOM05D001692 ORTHO05D005276 1.8e-33 145.6 101 70.3
Duzib213G0109 Durio zibethinus HOM05D001692 ORTHO05D005276 2.4e-33 145.2 89 78.7
Aa31LG10G1670 Aethionema arabicum HOM05D001692 ORTHO05D005276 1.2e-32 142.9 116 61.2
Lalb_Chr25g0285521 Lupinus albus HOM05D001692 ORTHO05D005276 2.6e-32 141.7 96 67.7
unitig_899.g15303 Utricularia gibba HOM05D001692 ORTHO05D005276 7.7e-32 140.2 101 68.3
Pp3c15_10210 Physcomitrium patens HOM05D001692 ORTHO05D005276 1.0e-31 139.8 100 68.0
arahy.Tifrunner.gnm1.ann1.YW8AP0 Arachis hypogaea HOM05D001692 ORTHO05D005276 1.7e-31 139.0 157 48.4
CARHR043830 Cardamine hirsuta HOM05D001692 ORTHO05D005276 2.9e-31 138.3 97 66.0
Hund10367 Selenicereus undatus HOM05D001692 ORTHO05D005276 3.8e-31 137.9 88 75.0
Zm00001eb157380 Zea mays HOM05D001692 ORTHO05D005276 1.1e-30 136.3 97 68.0
SMO364G0689 Selaginella moellendorffii HOM05D001692 ORTHO05D005276 1.9e-30 135.6 100 65.0
CARHR042800 Cardamine hirsuta HOM05D001692 ORTHO05D005276 4.2e-30 134.4 99 63.6
Thecc.01G169600 Theobroma cacao HOM05D001692 ORTHO05D005276 4.7e-29 131.0 92 68.5
CAN.G1320.2 Capsicum annuum HOM05D001692 ORTHO05D005276 2.8e-26 121.7 102 60.8
MELO3C025595.2 Cucumis melo HOM05D001692 ORTHO05D005276 2.4e-25 118.6 87 70.1
TPR.G29676 Trifolium pratense HOM05D001692 ORTHO05D005276 1.2e-24 116.3 82 69.5
CDE02G3376 Ceratophyllum demersum HOM05D001692 ORTHO05D005276 1.7e-23 112.5 83 68.7
CBR_g52354 Chara braunii HOM05D001692 ORTHO05D005276 2.1e-21 105.5 84 61.9
PGR083G0106 Punica granatum HOM05D001692 ORTHO05D005276 1.8e-20 102.4 76 68.4
PRCOL_00005441 Prasinoderma coloniale HOM05D001692 ORTHO05D005276 3.0e-20 101.7 101 51.5
vmacro09423 Vaccinium macrocarpon HOM05D001692 ORTHO05D005276 8.8e-20 100.1 51 90.2
Haze_27488 Corylus avellana HOM05D001692 ORTHO05D005276 7.5e-19 97.1 102 49.0
RhsimUnG0205900 Rhododendron simsii HOM05D001692 ORTHO05D005276 9.8e-19 96.7 52 84.6
MCO11G587 Micromonas commoda HOM05D001692 ORTHO05D005276 2.2e-18 95.5 102 51.0
Actinidia03648 Actinidia chinensis HOM05D001692 ORTHO05D005276 8.3e-18 93.6 51 82.4
Sabra05G0155400 Salix brachista HOM05D001692 ORTHO05D005276 3.1e-17 91.7 51 78.4
Sabra05G0155600 Salix brachista HOM05D001692 ORTHO05D005276 6.6e-15 84.0 38 92.1
Nitab4.5_0000639g0070 Nicotiana tabacum HOM05D001692 ORTHO05D005276 4.7e-13 77.8 37 89.2
RhsimUnG0205800 Rhododendron simsii HOM05D001692 ORTHO05D005276 8.0e-13 77.0 37 86.5
vmacro09424 Vaccinium macrocarpon HOM05D001692 ORTHO05D005276 1.8e-12 75.9 37 86.5
Lsat_1_v5_gn_0_2340 Lactuca sativa HOM05D001692 ORTHO05D005276 4.0e-12 74.7 37 83.8
BraA06t23321Z Brassica rapa HOM05D001692 ORTHO05D005276 2.6e-11 72.0 36 83.3
vmacro03132 Vaccinium macrocarpon HOM05D041814 ORTHO05D037819 1.3e-07 59.7 30 80.0
SHI03281 Sapria himalayana HOM05D001692 ORTHO05D000001 2.3e-07 58.9 87 42.5


User provided reference genes

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