Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.3e-218 763.5 646 100.0
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 8.8e-210 734.2 646 98.0
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.7e-197 693.3 646 95.8
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.4e-170 604.0 646 87.3
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 1.3e-168 597.4 646 87.0
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 2.6e-161 573.2 648 85.0
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 7.0e-159 565.1 646 84.5
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.6e-145 520.0 646 82.4
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.8e-145 518.8 646 82.4
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 6.2e-123 445.7 649 75.5
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 1.7e-120 437.6 655 74.7
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.8e-120 436.4 647 76.7
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.7e-118 430.3 648 75.2
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.6e-113 413.7 585 81.7
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 2.5e-111 407.1 647 74.0
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.8e-109 401.0 649 72.7
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 3.3e-108 396.7 647 73.4
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 4.8e-107 392.9 645 73.2
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 2.4e-106 390.6 647 73.7
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 5.3e-106 389.4 645 72.1
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 6.9e-106 389.0 641 72.5
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 2.0e-105 387.5 643 73.4
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 2.0e-105 387.5 650 72.6
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 4.5e-105 386.3 657 72.9
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 1.7e-104 384.4 650 71.8
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 6.5e-104 382.5 649 73.2
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 1.1e-103 381.7 651 72.4
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 1.4e-103 381.3 647 71.1
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 1.9e-100 370.9 650 72.3
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 5.7e-100 369.4 647 73.7
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 1.4e-98 364.8 650 70.8
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 5.3e-98 362.8 644 71.3
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 1.5e-97 361.3 643 70.5
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 2.6e-97 360.5 648 70.7
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.3e-96 358.2 650 69.2
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 8.5e-96 355.5 643 69.8
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 8.5e-96 355.5 649 71.8
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 7.2e-95 352.4 657 69.7
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 4.6e-94 349.7 650 70.5
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 3.9e-93 346.7 648 70.1
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 5.1e-93 346.3 650 71.7
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 5.7e-92 342.8 634 70.8
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.1e-90 338.6 624 71.3
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 4.1e-90 336.7 651 68.8
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 9.1e-90 335.5 647 69.4
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 9.1e-90 335.5 647 69.4
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.0e-88 332.0 658 71.6
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.0e-88 332.0 627 71.3
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 8.5e-88 328.9 658 71.4
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 1.1e-87 328.6 648 69.1
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 1.4e-87 328.2 651 67.3
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 3.2e-87 327.0 648 68.5
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 4.2e-87 326.6 648 68.7
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.2e-87 326.6 650 68.3
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 6.1e-86 322.8 654 68.2
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 1.0e-85 322.0 650 68.3
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 3.0e-85 320.5 623 70.6
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 1.5e-84 318.2 623 70.8
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 3.3e-84 317.0 655 67.6
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 5.7e-84 316.2 623 70.6
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 7.4e-84 315.8 623 70.9
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.3e-83 315.1 651 68.4
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 8.2e-83 312.4 654 67.6
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.1e-82 312.0 652 69.0
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 5.3e-82 309.7 632 69.5
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 5.3e-82 309.7 648 68.2
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 2.0e-81 307.8 642 69.0
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 1.0e-80 305.4 257 65.4
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.2e-80 304.3 648 67.1
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.0e-80 303.1 614 69.2
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 4.2e-79 300.1 649 67.6
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 5.5e-79 299.7 651 67.9
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.0e-77 295.4 646 68.6
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.3e-77 294.3 653 64.5
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 6.3e-75 286.2 651 65.7
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 6.3e-75 286.2 644 66.6
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.4e-74 284.3 653 55.6
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 4.1e-74 283.5 639 66.8
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 9.1e-74 282.3 655 66.6
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 2.2e-72 277.7 640 67.5
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.9e-72 277.3 655 66.1
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 3.8e-72 276.9 243 64.2
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 3.8e-72 276.9 645 64.8
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 5.5e-71 273.1 595 70.1
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.0e-69 268.9 639 65.1
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.7e-67 260.4 651 64.7
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.7e-65 254.2 642 67.0
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 7.7e-65 252.7 648 66.2
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.1e-63 248.8 650 59.4
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.9e-63 248.1 640 64.7
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 9.5e-63 245.7 652 67.3
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 4.7e-62 243.4 660 63.0
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 4.0e-61 240.4 259 53.3
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 4.0e-61 240.4 647 44.5
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 5.2e-61 240.0 637 65.1
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 8.8e-61 239.2 638 65.7
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.2e-60 238.8 629 64.4
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.2e-60 238.8 629 64.4
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 7.5e-60 236.1 636 65.7
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 9.8e-60 235.7 628 65.1
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 5.0e-56 223.4 663 64.0
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 5.0e-56 223.4 654 61.2
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.9e-55 221.5 660 64.1
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.9e-55 221.5 662 63.9
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 1.9e-55 221.5 631 63.7
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 4.3e-55 220.3 660 64.5
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.5e-55 219.2 651 65.0
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 3.4e-52 210.7 635 63.3
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 2.7e-49 201.1 652 63.7
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 3.0e-48 197.6 658 63.2
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 6.6e-48 196.4 666 62.5
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.5e-47 195.3 652 63.3
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 4.0e-45 187.2 645 60.0
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 1.5e-44 185.3 654 63.0
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 2.6e-44 184.5 657 58.0
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 2.2e-43 181.4 655 62.9
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.1e-42 179.1 641 63.5
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.1e-42 179.1 641 63.5
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 3.2e-42 177.6 652 62.7
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 1.2e-41 175.6 232 73.7
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 6.6e-40 169.9 642 62.9
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 9.5e-39 166.0 641 63.2
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 2.8e-38 164.5 641 62.7
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 9.8e-36 156.0 264 44.3
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 2.2e-35 154.8 638 60.3
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.4e-34 152.1 659 59.0
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.4e-34 151.4 651 59.3
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 7.3e-31 139.8 651 57.1
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 9.5e-31 139.4 629 60.7
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 4.0e-29 134.0 451 75.6
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 3.4e-28 131.0 491 53.2
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 4.4e-28 130.6 635 60.3
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 7.6e-28 129.8 652 58.1
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 2.9e-27 127.9 635 60.2
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 2.9e-27 127.9 663 56.0
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.4e-26 125.6 650 58.9
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.4e-26 124.8 643 59.7
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 1.3e-24 119.0 649 45.6
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.7e-24 118.6 271 36.2
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 8.6e-24 116.3 252 39.3
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 5.6e-23 113.6 624 51.1
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 3.6e-22 110.9 640 59.1
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 1.1e-21 109.4 246 36.2
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.8e-21 108.6 234 35.0
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.4e-21 108.2 673 56.9
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 8.9e-21 106.3 237 35.0
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.0e-20 105.1 641 57.3
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 2.6e-20 104.8 641 58.2
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.3e-19 102.4 649 57.3
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 4.9e-19 100.5 609 57.3
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 3.5e-17 94.4 627 57.6
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 1.9e-15 88.6 238 33.2
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.8e-14 84.7 106 48.1
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.6e-14 84.3 97 50.5
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 4.8e-14 84.0 242 32.2
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 4.8e-14 84.0 239 33.9
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 6.2e-14 83.6 254 31.9
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 8.1e-14 83.2 145 43.4
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 4.0e-13 80.9 620 46.3
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 4.0e-13 80.9 620 46.3
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 5.3e-13 80.5 205 33.2
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.5e-12 79.0 194 34.5
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.5e-12 79.0 94 50.0
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 2.0e-12 78.6 206 34.0
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.0e-12 78.6 79 54.4
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.8e-12 77.0 85 52.9
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 4.9e-11 73.9 177 36.7
Haze_27105 Corylus avellana HOM05D003963 ORTHO05D004558 2.4e-10 71.6 71 57.7
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 8.7e-08 63.2 438 56.2
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 9.6e-07 59.7 267 29.6
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.3e-06 59.3 117 38.5
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 1.6e-06 58.9 122 35.2
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 2.8e-06 58.2 154 33.1
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 2.8e-06 58.2 265 27.9
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 3.7e-06 57.8 218 29.8
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 4.8e-06 57.4 113 40.7
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 8.1e-06 56.6 151 31.8
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 8.1e-06 56.6 232 28.9


User provided reference genes

Program Settings