Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.7e-61 237.7 119 100.0
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.0e-60 234.6 118 99.2
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.2e-56 223.0 118 94.9
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.5e-38 162.9 128 68.8
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.3e-37 159.8 130 66.9
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.6e-37 159.5 130 66.9
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.5e-35 152.9 128 64.1
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.0e-35 152.5 128 64.1
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 2.6e-35 152.1 128 64.8
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.9e-34 148.7 125 63.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.5e-34 147.5 127 62.2
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.5e-33 145.6 128 62.5
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 3.5e-32 141.7 152 55.3
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.0e-31 140.2 128 59.4
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 1.3e-31 139.8 128 57.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.3e-31 139.8 128 57.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 3.0e-31 138.7 126 57.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 3.0e-31 138.7 129 58.1
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.0e-31 138.7 130 55.4
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.9e-30 136.0 130 56.2
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.5e-30 135.6 128 54.7
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 2.5e-30 135.6 127 58.3
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 4.3e-30 134.8 122 57.4
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.4e-30 134.0 128 54.7
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.4e-30 134.0 128 54.7
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 7.4e-30 134.0 122 57.4
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.4e-30 134.0 125 54.4
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-29 133.3 128 54.7
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-29 133.3 128 54.7
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.3e-29 133.3 127 54.3
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.6e-29 132.9 125 56.0
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.1e-29 132.5 131 55.0
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.8e-29 132.1 131 56.5
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 2.8e-29 132.1 126 55.6
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.7e-29 131.7 128 55.5
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 3.7e-29 131.7 125 54.4
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 4.8e-29 131.3 125 56.0
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.8e-29 131.3 124 56.5
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 4.8e-29 131.3 124 55.6
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 4.8e-29 131.3 126 55.6
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 4.8e-29 131.3 126 55.6
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 6.2e-29 131.0 124 57.3
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 6.2e-29 131.0 128 52.3
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 6.2e-29 131.0 120 57.5
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 8.2e-29 130.6 131 54.2
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.1e-28 130.2 127 54.3
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.1e-28 130.2 126 56.3
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.1e-28 130.2 124 55.6
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.1e-28 130.2 130 53.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.4e-28 129.8 130 52.3
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.4e-28 129.8 126 55.6
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.4e-28 129.8 126 54.8
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.4e-28 129.8 125 56.0
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.4e-28 129.8 125 56.0
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 1.4e-28 129.8 128 54.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.4e-28 129.8 126 57.1
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.4e-28 129.8 128 56.2
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.8e-28 129.4 125 56.0
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.8e-28 129.4 124 55.6
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.8e-28 129.4 124 55.6
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.8e-28 129.4 126 56.3
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.8e-28 129.4 126 57.1
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 2.4e-28 129.0 124 55.6
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.4e-28 129.0 126 54.0
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 2.4e-28 129.0 126 56.3
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 3.1e-28 128.6 125 55.2
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.1e-28 128.6 128 53.9
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.1e-28 128.6 126 54.8
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.1e-28 128.6 126 56.3
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 3.1e-28 128.6 128 56.2
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 4.1e-28 128.3 124 54.8
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 4.1e-28 128.3 124 54.8
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 4.1e-28 128.3 130 53.8
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.1e-28 128.3 126 55.6
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 4.1e-28 128.3 126 57.9
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 4.1e-28 128.3 126 55.6
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 4.1e-28 128.3 124 54.8
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 5.3e-28 127.9 128 53.1
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.3e-28 127.9 128 53.1
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 5.3e-28 127.9 124 54.8
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 5.3e-28 127.9 122 54.9
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 6.9e-28 127.5 125 56.0
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 6.9e-28 127.5 124 53.2
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 6.9e-28 127.5 124 55.6
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 6.9e-28 127.5 126 53.2
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 6.9e-28 127.5 128 54.7
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 9.0e-28 127.1 124 55.6
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 9.0e-28 127.1 125 54.4
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 9.0e-28 127.1 124 53.2
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.2e-27 126.7 129 53.5
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.2e-27 126.7 124 54.0
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.2e-27 126.7 124 54.0
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.2e-27 126.7 124 53.2
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.2e-27 126.7 125 55.2
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.2e-27 126.7 125 55.2
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.2e-27 126.7 124 53.2
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.5e-27 126.3 124 55.6
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.5e-27 126.3 126 55.6
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.5e-27 126.3 128 52.3
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.5e-27 126.3 124 54.8
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 2.0e-27 125.9 126 53.2
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 2.0e-27 125.9 124 55.6
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 2.0e-27 125.9 126 54.0
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.0e-27 125.9 128 53.1
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.6e-27 125.6 126 54.8
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 2.6e-27 125.6 124 53.2
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 3.4e-27 125.2 124 54.8
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 3.4e-27 125.2 120 55.8
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 3.4e-27 125.2 125 53.6
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 3.4e-27 125.2 126 57.1
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.4e-27 125.2 124 54.8
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 3.4e-27 125.2 124 54.0
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 4.5e-27 124.8 126 57.1
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 5.8e-27 124.4 124 54.0
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 7.6e-27 124.0 126 54.0
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 7.6e-27 124.0 126 53.2
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.0e-26 123.6 128 54.7
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.7e-26 122.9 122 55.7
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-26 122.9 128 52.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.7e-26 122.9 124 52.4
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.2e-26 122.5 128 53.1
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 2.9e-26 122.1 124 53.2
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.9e-26 122.1 119 54.6
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 3.8e-26 121.7 127 54.3
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 6.5e-26 120.9 124 51.6
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 6.5e-26 120.9 125 52.8
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 8.4e-26 120.6 124 50.8
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.9e-25 119.4 127 52.8
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.5e-25 119.0 119 52.9
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 4.2e-25 118.2 128 51.6
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 5.5e-25 117.9 128 50.8
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 5.5e-25 117.9 124 51.6
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.7e-24 115.5 128 50.8
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 4.6e-24 114.8 130 49.2
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 7.9e-24 114.0 122 49.2
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 2.3e-23 112.5 124 48.4
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 3.9e-23 111.7 124 49.2
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.1e-23 111.3 124 50.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 8.7e-23 110.5 126 46.8
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.5e-22 109.0 124 47.6
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 7.4e-22 107.5 120 48.3
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.6e-21 106.3 127 48.0
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 1.6e-21 106.3 96 59.4
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 8.2e-21 104.0 120 47.5
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 8.2e-21 104.0 120 46.7
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 2.9e-18 95.5 77 62.3
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.2e-17 90.9 120 40.8
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 9.4e-17 90.5 120 40.8
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 9.4e-17 90.5 126 42.9
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 9.4e-17 90.5 83 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.6e-16 89.7 123 40.7
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.2e-13 79.3 125 36.8
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 2.8e-13 79.0 126 36.5
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.8e-13 78.2 71 56.3
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 8.2e-13 77.4 74 51.4
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 8.2e-13 77.4 71 57.7
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-12 76.6 71 54.9
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.4e-12 75.9 70 54.3
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.4e-12 75.9 71 54.9
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.9e-12 74.3 71 54.9
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.0e-10 70.5 104 43.3
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 4.2e-09 65.1 156 28.8
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 8.8e-07 57.4 85 37.6
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 3.3e-06 55.5 112 34.8


User provided reference genes

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