Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.5e-170 602.1 306 100.0
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.7e-163 579.3 306 96.4
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.1e-138 496.9 306 82.4
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-136 490.0 306 81.0
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.4e-136 490.0 306 81.0
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.6e-135 485.7 306 80.4
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.4e-135 485.0 306 81.0
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.2e-134 482.6 306 80.7
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 3.7e-134 481.9 306 80.1
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.3e-134 481.1 306 80.4
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.4e-128 463.4 304 75.7
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.1e-125 453.8 271 83.4
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.4e-125 452.6 302 72.8
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 3.1e-125 452.2 303 72.9
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 4.1e-125 451.8 304 74.0
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 9.2e-125 450.7 387 64.3
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.0e-124 449.5 298 72.8
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.0e-124 449.5 306 73.9
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 5.9e-124 448.0 304 73.4
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.8e-124 447.6 298 75.2
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.0e-123 447.2 304 72.7
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.0e-123 447.2 302 74.5
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.7e-123 446.4 298 75.2
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.7e-123 446.4 306 72.2
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 8.6e-123 444.1 298 74.8
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.5e-122 442.6 302 73.8
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.3e-122 441.8 230 96.1
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 5.6e-122 441.4 308 71.8
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 9.5e-122 440.7 309 73.5
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 3.6e-121 438.7 304 71.1
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 8.0e-121 437.6 310 70.0
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.4e-120 436.8 300 71.7
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.2e-120 434.9 310 70.3
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 8.9e-120 434.1 302 68.5
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 2.0e-119 433.0 302 68.2
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.4e-119 432.2 302 71.2
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 4.4e-119 431.8 300 71.3
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 7.5e-119 431.0 304 70.1
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.3e-118 430.3 302 71.2
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 3.7e-118 428.7 302 70.5
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 4.9e-118 428.3 305 71.1
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 8.3e-118 427.6 296 70.3
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 2.4e-117 426.0 297 72.1
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 3.2e-117 425.6 309 69.3
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 3.2e-117 425.6 301 71.8
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 5.4e-117 424.9 304 70.4
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.2e-116 423.7 304 70.4
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 3.5e-116 422.2 306 69.0
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 3.5e-116 422.2 291 70.4
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 4.6e-116 421.8 312 67.0
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 6.0e-116 421.4 298 70.5
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 6.0e-116 421.4 306 68.3
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.0e-115 420.6 306 68.6
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.3e-115 420.2 306 67.6
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.3e-115 420.2 310 68.7
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 2.3e-115 419.5 305 68.2
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 3.9e-115 418.7 304 70.4
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.9e-115 418.7 295 70.2
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 5.0e-115 418.3 300 69.0
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.1e-114 417.2 304 70.1
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.5e-114 416.8 306 67.3
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.5e-114 416.8 300 68.7
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.3e-114 415.6 302 67.5
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 4.3e-114 415.2 287 70.0
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 5.6e-114 414.8 345 64.1
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.6e-114 414.8 303 68.3
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 5.6e-114 414.8 294 69.7
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 7.3e-114 414.5 307 67.4
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 7.3e-114 414.5 294 69.7
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.6e-113 413.3 295 69.8
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.6e-113 413.3 296 69.3
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.1e-113 412.9 306 66.7
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 2.1e-113 412.9 299 70.2
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 2.1e-113 412.9 302 65.2
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.8e-113 412.5 295 69.5
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.6e-113 412.1 311 67.2
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 6.2e-113 411.4 300 67.3
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.2e-113 411.4 297 70.0
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 8.0e-113 411.0 307 66.8
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.1e-112 410.6 272 72.8
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.8e-112 409.8 306 66.7
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.8e-112 409.8 296 68.2
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 2.3e-112 409.5 305 68.2
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 3.1e-112 409.1 299 67.9
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 4.0e-112 408.7 300 67.3
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 5.2e-112 408.3 312 66.7
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 5.2e-112 408.3 307 68.1
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 6.8e-112 407.9 303 66.7
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 8.9e-112 407.5 304 65.5
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.2e-111 407.1 300 68.3
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.2e-111 407.1 305 65.6
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.5e-111 406.8 299 67.2
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.5e-111 406.8 305 66.6
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 5.8e-111 404.8 294 67.3
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 5.8e-111 404.8 295 67.5
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 9.8e-111 404.1 351 60.4
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 9.8e-111 404.1 295 67.8
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 9.8e-111 404.1 295 68.1
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 3.7e-110 402.1 303 65.7
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 6.4e-110 401.4 294 67.3
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 8.3e-110 401.0 294 66.3
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.9e-109 399.8 304 64.1
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.9e-109 399.8 282 68.8
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 9.2e-109 397.5 341 62.8
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 3.5e-108 395.6 284 68.7
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.0e-108 394.8 288 67.7
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 5.1e-107 391.7 295 67.1
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 5.1e-107 391.7 290 67.6
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 6.6e-107 391.3 260 74.6
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.1e-106 390.6 283 68.9
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.5e-106 390.2 258 75.6
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.9e-106 389.8 270 72.6
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.5e-106 389.4 311 62.1
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 4.3e-106 388.7 306 64.7
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.2e-105 387.1 287 66.2
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.1e-105 386.3 303 64.7
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.3e-104 382.9 342 58.5
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 3.1e-104 382.5 290 65.9
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.4e-103 379.0 265 69.4
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 9.9e-103 377.5 305 61.0
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 7.1e-101 371.3 269 67.3
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 3.3e-98 362.5 299 60.5
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 3.6e-97 359.0 307 59.3
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.7e-97 358.6 300 60.0
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 2.4e-96 356.3 238 71.0
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.6e-95 352.8 296 61.5
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 7.6e-95 351.3 305 56.4
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.7e-94 350.1 296 61.1
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.1e-89 333.2 289 58.1
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.3e-83 313.9 269 56.1
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.1e-82 310.8 288 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 6.9e-80 301.6 278 52.5
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.3e-78 297.4 260 59.6
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 6.4e-78 295.0 280 51.8
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.2e-77 292.7 278 52.9
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 3.0e-75 286.2 279 50.9
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 3.9e-75 285.8 279 50.9
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 9.6e-74 281.2 273 50.9
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.6e-73 280.4 300 47.7
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.6e-73 280.4 300 49.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 4.8e-73 278.9 273 51.3
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 9.3e-69 264.6 295 51.9
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 5.7e-66 255.4 193 63.7
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 9.0e-64 248.1 329 46.2
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.2e-63 247.7 217 55.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.6e-63 246.5 237 53.6
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.9e-62 243.0 196 65.8
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-58 231.1 215 58.6
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.5e-58 229.9 182 62.1
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 4.1e-56 222.6 217 53.0
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 3.2e-53 213.0 148 70.9
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 2.1e-52 210.3 221 47.1
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.7e-52 209.9 163 64.4
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.3e-46 191.0 295 36.6
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.9e-45 187.2 150 64.7
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 3.1e-40 169.9 151 57.6
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 6.3e-33 145.6 275 33.1
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 4.5e-31 139.4 315 28.3
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 8.0e-28 128.6 207 34.3
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-27 127.9 102 63.7
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.4e-24 115.9 76 75.0
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.0e-23 114.0 114 50.0
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-22 110.9 124 49.2
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.1e-21 108.2 253 30.8
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.6e-10 70.5 184 33.2
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 4.1e-08 63.2 56 48.2
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 7.8e-07 58.9 45 60.0


User provided reference genes

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