Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G020900 Gossypium raimondii HOM05D001200 ORTHO05D002731 9.1e-41 169.9 89 100.0
Gohir.D13G018850 Gossypium hirsutum HOM05D001200 ORTHO05D002731 8.8e-36 153.3 87 93.1
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 2.1e-29 132.1 96 78.1
C09p40370 Brassica napus HOM05D001200 ORTHO05D002731 8.8e-28 126.7 96 74.0
BcaC03g16699 Brassica carinata HOM05D001200 ORTHO05D002731 1.5e-27 125.9 96 74.0
C06p42250 Brassica napus HOM05D001200 ORTHO05D002731 1.5e-27 125.9 96 74.0
C09p24620 Brassica napus HOM05D001200 ORTHO05D002731 1.5e-27 125.9 96 74.0
BolSC29t60504H Brassica oleracea HOM05D001200 ORTHO05D002731 1.5e-27 125.9 96 74.0
BolSC37t60791H Brassica oleracea HOM05D001200 ORTHO05D002731 1.5e-27 125.9 96 74.0
BolSC46t60960H Brassica oleracea HOM05D001200 ORTHO05D002731 1.5e-27 125.9 96 74.0
BraSC179t45776Z Brassica rapa HOM05D001200 ORTHO05D002731 1.5e-27 125.9 96 74.0
BraSC59t46549Z Brassica rapa HOM05D001200 ORTHO05D002731 1.5e-27 125.9 96 74.0
CARHR282420 Cardamine hirsuta HOM05D001200 ORTHO05D002731 5.7e-27 124.0 96 72.9
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 5.7e-27 124.0 97 70.1
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 5.7e-27 124.0 97 70.1
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 5.7e-27 124.0 97 70.1
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 5.7e-27 124.0 97 70.1
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 5.7e-27 124.0 97 70.1
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 5.7e-27 124.0 97 70.1
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 5.7e-27 124.0 96 69.8
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 5.7e-27 124.0 96 69.8
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 7.5e-27 123.6 97 69.1
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 7.5e-27 123.6 97 69.1
Sed0012006 Sechium edule HOM05D001200 ORTHO05D002731 9.7e-27 123.2 96 72.9
BolC2t10611H Brassica oleracea HOM05D001200 ORTHO05D002731 1.3e-26 122.9 96 72.9
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.8e-26 121.7 97 68.0
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.8e-26 121.7 97 68.0
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 3.7e-26 121.3 93 71.0
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 4.8e-26 120.9 97 69.1
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 4.8e-26 120.9 97 69.1
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 4.8e-26 120.9 97 68.0
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 4.8e-26 120.9 96 70.8
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 6.3e-26 120.6 96 69.8
Phvul.002G050301 Phaseolus vulgaris HOM05D001200 ORTHO05D002731 6.3e-26 120.6 96 67.7
arahy.Tifrunner.gnm1.ann1.2QK9Z7 Arachis hypogaea HOM05D001200 ORTHO05D002731 1.4e-25 119.4 96 67.7
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 1.4e-25 119.4 96 69.8
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 1.8e-25 119.0 97 69.1
BolC7t43854H Brassica oleracea HOM05D001200 ORTHO05D002731 3.1e-25 118.2 96 69.8
Lalb_Chr23g0274791 Lupinus albus HOM05D001200 ORTHO05D002731 5.3e-25 117.5 94 68.1
Ciclev10013969m.g Citrus clementina HOM05D001200 ORTHO05D002731 5.9e-24 114.0 96 65.6
Ciclev10013974m.g Citrus clementina HOM05D001200 ORTHO05D002731 5.9e-24 114.0 96 65.6
Ciclev10027650m.g Citrus clementina HOM05D001200 ORTHO05D002731 5.9e-24 114.0 96 65.6
Medtr5g094180 Medicago truncatula HOM05D001200 ORTHO05D002731 5.9e-24 114.0 96 63.5
Medtr8g086440 Medicago truncatula HOM05D001200 ORTHO05D002731 7.7e-24 113.6 96 61.5
arahy.Tifrunner.gnm1.ann1.FIPJ9G Arachis hypogaea HOM05D001200 ORTHO05D002731 1.3e-23 112.8 94 66.0
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 1.3e-23 112.8 97 61.9
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 2.9e-23 111.7 96 64.6
Medtr7g075220 Medicago truncatula HOM05D000504 ORTHO05D002731 3.2e-22 108.2 95 66.3
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 3.0e-20 101.7 88 63.6
Gohir.A13G109925 Gossypium hirsutum HOM05D001200 ORTHO05D002731 2.0e-19 99.0 78 75.6
Medtr3g008330 Medicago truncatula HOM05D001200 ORTHO05D002731 5.7e-19 97.4 81 63.0
Medtr2g047260 Medicago truncatula HOM05D001200 ORTHO05D002731 9.8e-19 96.7 87 59.8
Medtr5g021300 Medicago truncatula HOM05D001200 ORTHO05D002731 9.8e-19 96.7 82 63.4
Peaxi162Scf01164g00035 Petunia axillaris HOM05D001200 ORTHO05D002731 1.3e-18 96.3 140 45.7
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 8.3e-18 93.6 76 69.7
Medtr7g086590 Medicago truncatula HOM05D001200 ORTHO05D002731 8.3e-18 93.6 86 58.1
Medtr4g080900 Medicago truncatula HOM05D001200 ORTHO05D002731 3.1e-17 91.7 120 50.0
HanXRQChr00c0289g0573121 Helianthus annuus HOM05D001200 ORTHO05D002731 4.1e-17 91.3 73 69.9
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 9.1e-17 90.1 87 63.2
Gohir.A01G143400 Gossypium hirsutum HOM05D001200 ORTHO05D002731 1.2e-16 89.7 86 64.0
Medtr2g042860 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-16 89.0 86 55.8
Gohir.A02G134201 Gossypium hirsutum HOM05D001200 ORTHO05D010401 7.7e-16 87.0 67 76.1
BolSC29t60621H Brassica oleracea HOM05D001200 ORTHO05D002731 1.0e-15 86.7 75 70.7
Medtr5g089040 Medicago truncatula HOM05D001200 ORTHO05D002731 2.3e-15 85.5 89 53.9
BolSC35t60702H Brassica oleracea HOM05D001200 ORTHO05D002731 6.6e-15 84.0 67 71.6
Hund08793 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund12716 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund12843 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund23968 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund27631 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund27678 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund27755 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund27831 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28438 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28448 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28536 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28587 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28596 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28613 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28880 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28937 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28946 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28951 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28954 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28961 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28974 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28979 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29026 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29089 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29109 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29179 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29186 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29244 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29247 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29254 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29261 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29273 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29277 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29281 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29285 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29288 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29316 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29434 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29453 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29499 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29654 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29713 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29755 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29814 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund29818 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund30036 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund30039 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund30120 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund30177 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund30365 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund30388 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.6e-15 84.0 87 57.5
Hund28850 Selenicereus undatus HOM05D001200 ORTHO05D002731 8.6e-15 83.6 87 56.3
Medtr2g102090 Medicago truncatula HOM05D001200 ORTHO05D002731 1.1e-14 83.2 74 60.8
Solyc01g065585.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 1.5e-14 82.8 79 58.2
Medtr7g108460 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-14 82.4 85 58.8
Hund29251 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-14 82.4 87 56.3
Medtr5g032430 Medicago truncatula HOM05D001200 ORTHO05D002731 4.2e-14 81.3 74 58.1
HanXRQChr00c0328g0573601 Helianthus annuus HOM05D001200 ORTHO05D002731 7.2e-14 80.5 68 66.2
GSVIVG01004976001 Vitis vinifera HOM05D001200 ORTHO05D010401 1.2e-13 79.7 85 56.5
Lsat_1_v5_gn_1_14200 Lactuca sativa HOM05D001200 ORTHO05D002731 1.6e-13 79.3 68 64.7
HanXRQChr03g0073091 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-13 79.0 49 79.6
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-13 79.0 49 79.6
Medtr2g103350 Medicago truncatula HOM05D001200 ORTHO05D002731 3.6e-13 78.2 86 51.2
Oeu053979.1 Olea europaea HOM05D001200 ORTHO05D002731 8.0e-13 77.0 84 54.8
Medtr4g086110 Medicago truncatula HOM05D001200 ORTHO05D002731 1.0e-12 76.6 73 57.5
BolSC44t60820H Brassica oleracea HOM05D001200 ORTHO05D002731 3.0e-12 75.1 64 70.3
Ciclev10010880m.g Citrus clementina HOM05D001200 ORTHO05D002731 4.0e-12 74.7 67 65.7
SMO086G0020 Selaginella moellendorffii HOM05D001200 ORTHO05D002731 4.0e-12 74.7 97 46.4
MD04G1189100 Malus domestica HOM05D001200 ORTHO05D002731 5.2e-12 74.3 86 53.5
Lalb_Chr07g0191751 Lupinus albus HOM05D001200 ORTHO05D002731 8.9e-12 73.6 65 63.1
Medtr3g071600 Medicago truncatula HOM05D001200 ORTHO05D002731 8.9e-12 73.6 81 51.9
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.0e-11 72.4 63 69.8
Migut.D01255 Erythranthe guttata HOM05D001200 ORTHO05D010401 3.4e-11 71.6 47 72.3
RcHm_v2.0_CPg0502801 Rosa chinensis HOM05D001200 ORTHO05D002731 4.4e-11 71.2 62 69.4
arahy.Tifrunner.gnm1.ann1.474EIA Arachis hypogaea HOM05D001200 ORTHO05D002731 5.7e-11 70.9 84 48.8
Ciclev10027631m.g Citrus clementina HOM05D001200 ORTHO05D002731 5.7e-11 70.9 48 70.8
Medtr3g098750 Medicago truncatula HOM05D003236 ORTHO05D003620 5.7e-11 70.9 97 50.5
Solyc01g065610.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 5.7e-11 70.9 67 58.2
BolSC29t60544H Brassica oleracea HOM05D001200 ORTHO05D002731 7.5e-11 70.5 65 69.2
Ciclev10006660m.g Citrus clementina HOM05D001200 ORTHO05D002731 9.8e-11 70.1 85 51.8
TPR.G24765 Trifolium pratense HOM05D001200 ORTHO05D002731 9.8e-11 70.1 44 75.0
Medtr3g073110 Medicago truncatula HOM05D001200 ORTHO05D002731 1.7e-10 69.3 86 47.7
BraSC59t46528Z Brassica rapa HOM05D001200 ORTHO05D002731 2.2e-10 68.9 59 69.5
Hund29438 Selenicereus undatus HOM05D001200 ORTHO05D002731 8.3e-10 67.0 87 50.6
Migut.D01384 Erythranthe guttata HOM05D001200 ORTHO05D002731 1.4e-09 66.2 91 46.2
CAN.G100.34 Capsicum annuum HOM05D001200 ORTHO05D002731 1.8e-09 65.9 82 43.9
Medtr7g112630 Medicago truncatula HOM05D001200 ORTHO05D002731 2.4e-09 65.5 65 52.3
Solyc11g021213.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 9.2e-09 63.5 68 52.9
Ciclev10030459m.g Citrus clementina HOM05D001200 ORTHO05D010401 1.6e-08 62.8 58 63.8
Oeu012765.1 Olea europaea HOM05D001200 ORTHO05D002731 1.3e-07 59.7 64 54.7
Gorai.006G071400 Gossypium raimondii HOM05D001200 ORTHO05D002731 1.7e-07 59.3 39 82.1
Medtr3g114440 Medicago truncatula HOM05D001200 ORTHO05D002731 1.7e-07 59.3 67 50.7
HanXRQChr08g0211971 Helianthus annuus HOM05D001200 ORTHO05D002731 5.0e-07 57.8 50 66.0
Hund03917 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.5e-06 55.5 68 51.5
Lalb_Chr18g0049441 Lupinus albus HOM05D001200 ORTHO05D002731 7.3e-06 53.9 67 52.2
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 9.5e-06 53.5 96 34.4


User provided reference genes

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