Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 3.5e-88 328.6 204 100.0
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 8.1e-85 317.4 204 97.5
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 4.3e-30 135.6 94 77.7
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 2.2e-29 133.3 93 77.4
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 5.3e-28 128.6 70 95.7
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 2.5e-25 119.8 98 71.4
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 1.8e-23 113.6 89 69.7
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 3.6e-16 89.4 83 61.4
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 1.0e-15 87.8 68 69.1
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 2.0e-14 83.6 81 56.8
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 3.3e-14 82.8 114 46.5
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 5.7e-14 82.0 100 53.0
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 5.7e-14 82.0 107 51.4
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 7.5e-14 81.6 102 51.0
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 9.7e-14 81.3 93 54.8
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 2.2e-13 80.1 103 51.5
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 2.8e-13 79.7 80 56.2
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 3.7e-13 79.3 103 50.5
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 6.3e-13 78.6 81 55.6
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 1.8e-12 77.0 97 47.4
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 1.8e-12 77.0 91 52.7
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.8e-12 77.0 82 56.1
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 2.4e-12 76.6 95 54.7
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 2.4e-12 76.6 154 38.3
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 3.1e-12 76.3 152 47.4
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 3.1e-12 76.3 102 51.0
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 3.1e-12 76.3 97 48.5
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 4.1e-12 75.9 102 47.1
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 4.1e-12 75.9 141 39.0
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 4.1e-12 75.9 103 50.5
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 4.1e-12 75.9 109 47.7
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 5.3e-12 75.5 148 38.5
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 7.0e-12 75.1 134 42.5
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 7.0e-12 75.1 99 52.5
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 9.1e-12 74.7 112 45.5
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 1.2e-11 74.3 78 59.0
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 1.2e-11 74.3 88 54.5
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 1.6e-11 73.9 99 54.5
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 1.6e-11 73.9 90 51.1
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 1.6e-11 73.9 102 49.0
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 2.0e-11 73.6 98 51.0
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 2.0e-11 73.6 98 51.0
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 2.7e-11 73.2 143 39.2
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 2.7e-11 73.2 75 56.0
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 2.7e-11 73.2 75 57.3
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 2.7e-11 73.2 100 46.0
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 2.7e-11 73.2 102 48.0
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 4.5e-11 72.4 84 54.8
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 4.5e-11 72.4 87 49.4
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 4.5e-11 72.4 78 55.1
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 4.5e-11 72.4 92 47.8
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 5.9e-11 72.0 89 48.3
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 7.7e-11 71.6 79 57.0
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 1.0e-10 71.2 95 46.3
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 1.7e-10 70.5 95 46.3
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 1.7e-10 70.5 78 56.4
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 2.2e-10 70.1 91 47.3
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 2.2e-10 70.1 79 51.9
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 2.2e-10 70.1 78 56.4
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 2.9e-10 69.7 120 45.0
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 2.9e-10 69.7 99 49.5
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 2.9e-10 69.7 89 50.6
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 2.9e-10 69.7 95 48.4
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 3.8e-10 69.3 120 44.2
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 3.8e-10 69.3 120 44.2
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 3.8e-10 69.3 120 44.2
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 5.0e-10 68.9 76 57.9
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 6.5e-10 68.6 78 55.1
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 6.5e-10 68.6 104 48.1
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 1.1e-09 67.8 102 50.0
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 1.1e-09 67.8 89 50.6
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 1.5e-09 67.4 78 52.6
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 1.5e-09 67.4 96 49.0
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 2.5e-09 66.6 94 48.9
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 2.5e-09 66.6 191 38.2
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 3.2e-09 66.2 76 52.6
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 4.2e-09 65.9 92 51.1
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 4.2e-09 65.9 94 50.0
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 4.2e-09 65.9 80 53.8
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 5.5e-09 65.5 88 48.9
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 9.4e-09 64.7 98 45.9
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 9.4e-09 64.7 96 45.8
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 1.2e-08 64.3 77 50.6
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 2.1e-08 63.5 104 46.2
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 2.1e-08 63.5 87 49.4
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 2.7e-08 63.2 81 49.4
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 2.7e-08 63.2 80 52.5
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 2.7e-08 63.2 77 49.4
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.0e-07 61.2 83 48.2
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 1.8e-07 60.5 85 47.1
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 5.2e-07 58.9 103 44.7
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 8.8e-07 58.2 100 42.0
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 8.8e-07 58.2 133 34.6
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 4.4e-06 55.8 101 39.6
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 7.5e-06 55.1 151 35.1
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 7.5e-06 55.1 94 40.4
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 7.5e-06 55.1 77 51.9
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 9.8e-06 54.7 86 45.3


User provided reference genes

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