Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G011100 Gossypium raimondii HOM05D010745 ORTHO05D013866 4.5e-95 351.3 182 100.0
Gohir.D13G010450 Gossypium hirsutum HOM05D010745 ORTHO05D013866 2.2e-94 349.0 182 99.5
Gohir.A13G009650 Gossypium hirsutum HOM05D010745 ORTHO05D013866 2.6e-82 308.9 185 88.1
Gohir.D13G010300 Gossypium hirsutum HOM05D010745 ORTHO05D013866 1.4e-56 223.4 174 68.4
Gorai.013G011000 Gossypium raimondii HOM05D010745 ORTHO05D013866 1.4e-56 223.4 174 68.4
Gohir.A05G299300 Gossypium hirsutum HOM05D010745 ORTHO05D013866 2.0e-55 219.5 179 67.0
Gohir.A13G009600 Gossypium hirsutum HOM05D010745 ORTHO05D013866 4.6e-55 218.4 174 67.2
Gohir.D13G010250 Gossypium hirsutum HOM05D010745 ORTHO05D013866 8.6e-54 214.2 168 67.9
Gohir.A13G009750 Gossypium hirsutum HOM05D010745 ORTHO05D013866 1.6e-47 193.4 170 62.4
Gorai.013G011400 Gossypium raimondii HOM05D010745 ORTHO05D013866 1.3e-41 173.7 169 60.4
Gohir.D13G010666 Gossypium hirsutum HOM05D010745 ORTHO05D013866 2.2e-41 172.9 169 60.4
Gorai.013G011300 Gossypium raimondii HOM05D010745 ORTHO05D013866 8.4e-33 144.4 121 63.6
Gohir.D13G010633 Gossypium hirsutum HOM05D010745 ORTHO05D013866 1.4e-32 143.7 121 63.6
Thecc.10G115400 Theobroma cacao HOM05D010745 ORTHO05D013866 2.9e-17 92.8 183 41.0
Dinv08595 Davidia involucrata HOM05D010745 ORTHO05D013866 1.1e-11 74.3 176 33.5
Dinv08596 Davidia involucrata HOM05D010745 ORTHO05D001508 4.5e-10 68.9 130 33.8
HanXRQChr05g0130531 Helianthus annuus HOM05D001667 ORTHO05D001508 4.9e-09 65.5 111 38.7
Lsat_1_v5_gn_2_54800 Lactuca sativa HOM05D001667 ORTHO05D001508 1.1e-08 64.3 110 41.8
Eucgr.G02682 Eucalyptus grandis HOM05D010745 ORTHO05D013866 1.4e-08 63.9 113 34.5
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 1.9e-08 63.5 126 38.9
CsaV3_6G040940 Cucumis sativus L. HOM05D001667 ORTHO05D001508 1.9e-08 63.5 100 42.0
MBI17_g16778_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 1.9e-08 63.5 106 39.6
Sabra10G0188900 Salix brachista HOM05D001667 ORTHO05D001508 3.2e-08 62.8 105 39.0
AUR62028513 Chenopodium quinoa HOM05D001667 ORTHO05D001508 4.2e-08 62.4 124 36.3
Gohir.A09G097500 Gossypium hirsutum HOM05D001667 ORTHO05D001508 5.5e-08 62.0 107 40.2
SGA_v2.0_scaffold184G39999 Striga asiatica HOM05D001667 ORTHO05D001508 2.1e-07 60.1 109 35.8
COL.COLO4_22643 Corchorus olitorius HOM05D001667 ORTHO05D001508 2.7e-07 59.7 101 38.6
DCAR_020726 Daucus carota HOM05D001667 ORTHO05D001508 2.7e-07 59.7 104 39.4
HanXRQChr02g0053821 Helianthus annuus HOM05D001667 ORTHO05D001508 2.7e-07 59.7 120 34.2
Solyc01g007870.3 Solanum lycopersicum HOM05D001667 ORTHO05D001508 2.7e-07 59.7 121 34.7
PGSC0003DMG400016381 Solanum tuberosum HOM05D001667 ORTHO05D001508 2.7e-07 59.7 84 39.3
PSO801G0813 Papaver somniferum HOM05D001667 ORTHO05D001508 3.5e-07 59.3 116 37.9
Nitab4.5_0000840g0040 Nicotiana tabacum HOM05D001667 ORTHO05D001508 4.6e-07 58.9 108 37.0
QL04p047013 Quercus lobata HOM05D001667 ORTHO05D001508 4.6e-07 58.9 145 34.5
arahy.Tifrunner.gnm1.ann1.8QQ9KG Arachis hypogaea HOM05D001667 ORTHO05D001508 6.0e-07 58.5 122 36.1
Gohir.D09G097200 Gossypium hirsutum HOM05D001667 ORTHO05D001508 6.0e-07 58.5 107 39.3
MSTRG.19292 Avicennia marina HOM05D001667 ORTHO05D001508 7.9e-07 58.2 108 40.7
MSTRG.5878 Avicennia marina HOM05D001667 ORTHO05D001508 7.9e-07 58.2 106 39.6
ECA238G0917 Erigeron canadensis HOM05D001667 ORTHO05D001508 7.9e-07 58.2 114 34.2
Nn2g14254 Nelumbo nucifera HOM05D001590 ORTHO05D001508 7.9e-07 58.2 122 34.4
TPR.G4520 Trifolium pratense HOM05D001667 ORTHO05D001508 7.9e-07 58.2 76 39.5
TWI74G1322 Tripterygium wilfordii HOM05D001667 ORTHO05D001508 7.9e-07 58.2 105 39.0
Ca_11725_v3 Cicer arietinum L. HOM05D001667 ORTHO05D001508 1.0e-06 57.8 114 34.2
Oeu038096.1 Olea europaea HOM05D001667 ORTHO05D001508 1.0e-06 57.8 116 36.2
THA.LOC104816609 Tarenaya hassleriana HOM05D001667 ORTHO05D001508 1.0e-06 57.8 110 38.2
arahy.Tifrunner.gnm1.ann1.DY9K7Z Arachis hypogaea HOM05D001667 ORTHO05D001508 1.3e-06 57.4 121 35.5
CSS0036703 Camellia sinensis var. sinensis HOM05D001667 ORTHO05D001508 1.3e-06 57.4 121 35.5
CSS0040873 Camellia sinensis var. sinensis HOM05D001667 ORTHO05D001508 1.3e-06 57.4 121 35.5
Migut.L01911 Erythranthe guttata HOM05D001667 ORTHO05D001508 1.3e-06 57.4 103 36.9
Gorai.006G113900 Gossypium raimondii HOM05D001667 ORTHO05D001508 1.3e-06 57.4 107 39.3
Ciclev10013147m.g Citrus clementina HOM05D001667 ORTHO05D001508 1.8e-06 57.0 104 40.4
Duzib150G0725 Durio zibethinus HOM05D001667 ORTHO05D001508 1.8e-06 57.0 104 37.5
MD14G1034000 Malus domestica HOM05D001667 ORTHO05D001508 1.8e-06 57.0 101 39.6
Sed0007684 Sechium edule HOM05D001667 ORTHO05D001508 1.8e-06 57.0 101 37.6
MELO3C009512.2 Cucumis melo HOM05D001667 ORTHO05D001508 2.3e-06 56.6 102 38.2
Dinv31738 Davidia involucrata HOM05D001667 ORTHO05D001508 2.3e-06 56.6 117 36.8
Lalb_Chr01g0017921 Lupinus albus HOM05D001667 ORTHO05D001508 2.3e-06 56.6 95 37.9
Manes.09G049500 Manihot esculenta HOM05D001667 ORTHO05D001508 2.3e-06 56.6 104 36.5
TAR623G1308 Trochodendron aralioides HOM05D001667 ORTHO05D001508 2.3e-06 56.6 111 36.9
CsaV3_3G037690 Cucumis sativus L. HOM05D001667 ORTHO05D001508 3.0e-06 56.2 102 38.2
Dinv21143 Davidia involucrata HOM05D001667 ORTHO05D001508 3.0e-06 56.2 110 35.5
Eucgr.A02613 Eucalyptus grandis HOM05D001667 ORTHO05D001508 3.0e-06 56.2 102 34.3
HanXRQChr01g0025551 Helianthus annuus HOM05D001667 ORTHO05D001508 3.0e-06 56.2 111 36.9
Lsat_1_v5_gn_1_57381 Lactuca sativa HOM05D001667 ORTHO05D001508 3.0e-06 56.2 106 37.7
Lj5g0002622 Lotus japonicus HOM05D001667 ORTHO05D001508 3.0e-06 56.2 111 36.0
Lalb_Chr02g0154691 Lupinus albus HOM05D001667 ORTHO05D001508 3.0e-06 56.2 98 37.8
Medtr1g058120 Medicago truncatula HOM05D001667 ORTHO05D001508 3.0e-06 56.2 114 36.8
Oeu017706.1 Olea europaea HOM05D001667 ORTHO05D001508 3.0e-06 56.2 101 36.6
HanXRQChr13g0398121 Helianthus annuus HOM05D001667 ORTHO05D001508 3.9e-06 55.8 107 37.4
Nn6g34775 Nelumbo nucifera HOM05D001667 ORTHO05D001508 3.9e-06 55.8 126 34.1
Oeu009316.1 Olea europaea HOM05D001667 ORTHO05D001508 5.1e-06 55.5 102 40.2
Rhsim03G0067600 Rhododendron simsii HOM05D001667 ORTHO05D001508 5.1e-06 55.5 103 37.9
Thecc.09G277000 Theobroma cacao HOM05D001667 ORTHO05D001508 5.1e-06 55.5 114 34.2
ClCG10G018560 Citrullus lanatus HOM05D001667 ORTHO05D001508 6.7e-06 55.1 102 37.3
Glyma.20G008100 Glycine max HOM05D001667 ORTHO05D001508 6.7e-06 55.1 142 33.8
Manes.08G030700 Manihot esculenta HOM05D001667 ORTHO05D001508 6.7e-06 55.1 102 34.3
Potri.010G241400 Populus trichocarpa HOM05D001667 ORTHO05D001508 6.7e-06 55.1 111 35.1
Sed0015032 Sechium edule HOM05D001667 ORTHO05D001508 6.7e-06 55.1 152 29.6
EL10Ac7g16821 Beta vulgaris HOM05D001667 ORTHO05D001508 8.7e-06 54.7 133 34.6
ClCG04G010320 Citrullus lanatus HOM05D001667 ORTHO05D001508 8.7e-06 54.7 98 34.7
MD12G1033200 Malus domestica HOM05D001667 ORTHO05D001508 8.7e-06 54.7 107 37.4


User provided reference genes

Program Settings