Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G004600 Gossypium raimondii HOM05D000274 ORTHO05D002552 2.7e-29 131.3 67 100.0
Gohir.A05G285000 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.9e-19 98.6 74 70.3
Gohir.D01G102021 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.5e-19 98.2 73 69.9
Gohir.D06G018300 Gossypium hirsutum HOM05D000274 ORTHO05D002552 5.6e-19 97.1 74 68.9
Gohir.A12G229201 Gossypium hirsutum HOM05D000274 ORTHO05D002552 7.4e-19 96.7 74 68.9
Sc24g0000880 Simmondsia chinensis HOM05D000274 ORTHO05D002552 1.3e-18 95.9 74 67.6
ATCG00670 Arabidopsis thaliana HOM05D000274 ORTHO05D002552 1.6e-18 95.5 74 66.2
MELO3C027089.2 Cucumis melo HOM05D000274 ORTHO05D002552 1.6e-18 95.5 74 67.6
AL2G21640 Arabidopsis lyrata HOM05D000274 ORTHO05D002552 2.1e-18 95.1 74 66.2
CARHR282180 Cardamine hirsuta HOM05D000274 ORTHO05D002552 2.1e-18 95.1 74 66.2
Gorai.009G282800 Gossypium raimondii HOM05D000274 ORTHO05D002552 2.1e-18 95.1 71 70.4
Lalb_Chr07g0192041 Lupinus albus HOM05D000274 ORTHO05D002552 2.1e-18 95.1 74 66.2
PSO548G0031 Papaver somniferum HOM05D000274 ORTHO05D002552 2.1e-18 95.1 73 65.8
PGR111G0023 Punica granatum HOM05D000274 ORTHO05D002552 2.8e-18 94.7 72 66.7
Eucgr.I00671 Eucalyptus grandis HOM05D000274 ORTHO05D002552 3.6e-18 94.4 74 64.9
Cfa021574 Carpinus fangiana HOM05D000274 ORTHO05D002552 6.2e-18 93.6 74 63.5
Gohir.D06G104800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 8.1e-18 93.2 74 67.6
LjContig00318g0024179 Lotus japonicus HOM05D000274 ORTHO05D002552 1.1e-17 92.8 74 64.9
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.1e-17 92.8 71 64.8
Phvul.002G090301 Phaseolus vulgaris HOM05D000274 ORTHO05D002552 1.1e-17 92.8 74 63.5
arahy.Tifrunner.gnm1.ann1.002YPW Arachis hypogaea HOM05D000274 ORTHO05D002552 1.4e-17 92.4 72 65.3
arahy.Tifrunner.gnm1.ann1.3I6E4U Arachis hypogaea HOM05D000274 ORTHO05D002552 1.4e-17 92.4 72 65.3
arahy.Tifrunner.gnm1.ann1.JE9GG4 Arachis hypogaea HOM05D000274 ORTHO05D002552 1.4e-17 92.4 72 65.3
arahy.Tifrunner.gnm1.ann1.KX9QRC Arachis hypogaea HOM05D000274 ORTHO05D002552 1.4e-17 92.4 72 65.3
BcaC03g15273 Brassica carinata HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
BcaC07g42433 Brassica carinata HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
BNapus_Darmor_BZH_scaffold_287p00220 Brassica napus HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
C02p28700 Brassica napus HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
C02p43600 Brassica napus HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
C06p22930 Brassica napus HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
C06p23060 Brassica napus HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
BolSC29t60600H Brassica oleracea HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
BolSC35t60659H Brassica oleracea HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
BolSC46t61010H Brassica oleracea HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
BraSC138t45563Z Brassica rapa HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 64.9
DCAR_032510 Daucus carota HOM05D000274 ORTHO05D002552 1.4e-17 92.4 72 66.7
Sc02g0004580 Simmondsia chinensis HOM05D000274 ORTHO05D002552 1.4e-17 92.4 74 63.5
EL10Ac5g13040 Beta vulgaris HOM05D000274 ORTHO05D002552 1.8e-17 92.0 74 63.5
EL10As12g24030 Beta vulgaris HOM05D000274 ORTHO05D002552 1.8e-17 92.0 74 63.5
C04p42950 Brassica napus HOM05D000274 ORTHO05D002552 1.8e-17 92.0 74 64.9
BolC4t25865H Brassica oleracea HOM05D000274 ORTHO05D002552 1.8e-17 92.0 74 64.9
RcHm_v2.0_CPg0501991 Rosa chinensis HOM05D000274 ORTHO05D002552 2.4e-17 91.7 74 63.5
Sc09g0009710 Simmondsia chinensis HOM05D000274 ORTHO05D002552 3.1e-17 91.3 74 64.9
arahy.Tifrunner.gnm1.ann1.8S8FMR Arachis hypogaea HOM05D000274 ORTHO05D002552 4.0e-17 90.9 72 63.9
EL10Ac1g01444 Beta vulgaris HOM05D000274 ORTHO05D002552 4.0e-17 90.9 74 63.5
SalBow1G7090 Salvia bowleyana HOM05D000274 ORTHO05D002552 4.0e-17 90.9 74 63.5
C09p40540 Brassica napus HOM05D000274 ORTHO05D002552 6.9e-17 90.1 74 63.5
arahy.Tifrunner.gnm1.ann1.H8UXH3 Arachis hypogaea HOM05D000274 ORTHO05D002552 9.0e-17 89.7 72 65.3
ATR0303G006 Amborella trichopoda HOM05D000274 ORTHO05D002552 1.2e-16 89.4 74 62.2
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.2e-16 89.4 71 62.0
Sed0002260 Sechium edule HOM05D000274 ORTHO05D002552 1.2e-16 89.4 71 63.4
Sed0019404 Sechium edule HOM05D000274 ORTHO05D002552 1.2e-16 89.4 71 63.4
Sed0022936 Sechium edule HOM05D000274 ORTHO05D002552 1.2e-16 89.4 71 63.4
BraSC103t45477Z Brassica rapa HOM05D000274 ORTHO05D002552 1.5e-16 89.0 70 65.7
SalBow6G1627 Salvia bowleyana HOM05D000274 ORTHO05D002552 2.0e-16 88.6 74 62.2
Gohir.D06G113800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 3.4e-16 87.8 73 63.0
EL10Ac1g01196 Beta vulgaris HOM05D000274 ORTHO05D002552 5.8e-16 87.0 73 63.0
MBI06_g25326_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 5.8e-16 87.0 73 61.6
HanXRQChr00c0314g0573521 Helianthus annuus HOM05D000274 ORTHO05D002552 2.2e-15 85.1 74 62.2
HanXRQChr01g0020281 Helianthus annuus HOM05D000274 ORTHO05D002552 2.2e-15 85.1 74 62.2
HanXRQChr10g0283621 Helianthus annuus HOM05D000274 ORTHO05D002552 2.2e-15 85.1 74 62.2
HanXRQChr10g0284311 Helianthus annuus HOM05D000274 ORTHO05D002552 2.2e-15 85.1 74 62.2
HanXRQChr10g0289321 Helianthus annuus HOM05D000274 ORTHO05D002552 2.2e-15 85.1 74 62.2
HanXRQChr10g0318131 Helianthus annuus HOM05D000274 ORTHO05D002552 2.2e-15 85.1 74 62.2
HanXRQChr11g0326901 Helianthus annuus HOM05D000274 ORTHO05D002552 2.2e-15 85.1 74 62.2
HanXRQCPg0580111 Helianthus annuus HOM05D000274 ORTHO05D002552 2.2e-15 85.1 74 62.2
Lsat_1_v5_gn_9_50981 Lactuca sativa HOM05D000274 ORTHO05D002552 2.2e-15 85.1 74 62.2
ECA074G0006 Erigeron canadensis HOM05D000274 ORTHO05D002552 2.9e-15 84.7 74 60.8
Gohir.A10G134850 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.9e-15 84.7 74 62.2
HanXRQChr04g0095101 Helianthus annuus HOM05D000274 ORTHO05D002552 3.8e-15 84.3 74 62.2
Gohir.D02G116125 Gossypium hirsutum HOM05D000274 ORTHO05D002552 4.9e-15 84.0 68 61.8
Lalb_Chr03g0038761 Lupinus albus HOM05D000274 ORTHO05D002552 4.9e-15 84.0 74 59.5
SabraPtG0003900 Salix brachista HOM05D000274 ORTHO05D002552 4.9e-15 84.0 72 59.7
Gohir.D07G185750 Gossypium hirsutum HOM05D000274 ORTHO05D002552 6.4e-15 83.6 70 64.3
Gohir.D09G093050 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.1e-14 82.8 80 60.0
HanXRQChr11g0345211 Helianthus annuus HOM05D000274 ORTHO05D002552 1.1e-14 82.8 74 60.8
BcaB02g11359 Brassica carinata HOM05D000274 ORTHO05D002552 1.9e-14 82.0 72 59.7
HanXRQChr04g0094301 Helianthus annuus HOM05D000274 ORTHO05D002552 1.9e-14 82.0 74 60.8
MD11G1294400 Malus domestica HOM05D000274 ORTHO05D002552 1.9e-14 82.0 74 58.1
Nitab4.5_0010531g0050 Nicotiana tabacum HOM05D000274 ORTHO05D002552 2.4e-14 81.6 74 56.8
RcHm_v2.0_Chr6g0260431 Rosa chinensis HOM05D000274 ORTHO05D002552 4.2e-14 80.9 68 61.8
Nitab4.5_0005769g0060 Nicotiana tabacum HOM05D000274 ORTHO05D002552 5.5e-14 80.5 73 56.2
ATR1132G067 Amborella trichopoda HOM05D000274 ORTHO05D002552 9.3e-14 79.7 73 53.4
Gorai.002G210500 Gossypium raimondii HOM05D000274 ORTHO05D002552 9.3e-14 79.7 71 62.0
Lsat_1_v5_gn_4_118880 Lactuca sativa HOM05D000274 ORTHO05D002552 9.3e-14 79.7 74 58.1
MBI18_g10796_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 9.3e-14 79.7 73 57.5
Solyc00g500023.1 Solanum lycopersicum HOM05D000274 ORTHO05D002552 1.6e-13 79.0 73 54.8
COL.COLO4_02977 Corchorus olitorius HOM05D000274 ORTHO05D002552 2.1e-13 78.6 72 54.2
COL.COLO4_03028 Corchorus olitorius HOM05D000274 ORTHO05D002552 2.1e-13 78.6 72 54.2
COL.COLO4_03061 Corchorus olitorius HOM05D000274 ORTHO05D002552 2.1e-13 78.6 72 54.2
COL.COLO4_04073 Corchorus olitorius HOM05D000274 ORTHO05D002552 2.1e-13 78.6 72 54.2
Lalb_Chr04g0260931 Lupinus albus HOM05D000216 ORTHO05D002552 7.9e-13 76.6 65 61.5
Sed0002969 Sechium edule HOM05D000274 ORTHO05D002552 1.0e-12 76.3 64 60.9
Gohir.D01G169088 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.3e-12 75.9 71 60.6
CAN.G1739.8 Capsicum annuum HOM05D000274 ORTHO05D002552 1.8e-12 75.5 74 55.4
HanXRQChr06g0177591 Helianthus annuus HOM05D000274 ORTHO05D002552 1.8e-12 75.5 74 56.8
Gorai.010G140000 Gossypium raimondii HOM05D000274 ORTHO05D002552 5.1e-12 73.9 67 61.2
CAN.G219.29 Capsicum annuum HOM05D000274 ORTHO05D002552 6.7e-12 73.6 71 54.9
Gorai.002G264000 Gossypium raimondii HOM05D000274 ORTHO05D002552 2.5e-11 71.6 67 59.7
SMO086G0017 Selaginella moellendorffii HOM05D000274 ORTHO05D002552 2.5e-11 71.6 72 48.6
Ciclev10003424m.g Citrus clementina HOM05D000274 ORTHO05D002552 4.3e-11 70.9 72 54.2
Gohir.D01G217650 Gossypium hirsutum HOM05D000274 ORTHO05D002552 7.4e-11 70.1 67 58.2
Medtr0002s0730 Medicago truncatula HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Zm00001eb039170 Zea mays HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Zm00001eb255900 Zea mays HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Zm00001eb434890 Zea mays HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Zm00001eb435080 Zea mays HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Zm00001eb435150 Zea mays HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Zm00001eb435370 Zea mays HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Zm00001eb437160 Zea mays HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Zm00001eb439970 Zea mays HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Zm00001eb440350 Zea mays HOM05D000274 ORTHO05D002552 7.4e-11 70.1 70 48.6
Lsat_1_v5_gn_4_11460 Lactuca sativa HOM05D000274 ORTHO05D002552 9.6e-11 69.7 69 56.5
Medtr4g034690 Medicago truncatula HOM05D000274 ORTHO05D002552 1.3e-10 69.3 71 47.9
MBI13_g29602_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 3.7e-10 67.8 59 62.7
Psat0s1446g0160 Pisum sativum HOM05D000274 ORTHO05D002552 4.8e-10 67.4 71 46.5
Psat0s7142g0080 Pisum sativum HOM05D000274 ORTHO05D002552 4.8e-10 67.4 71 46.5
BcaC02g09867 Brassica carinata HOM05D000274 ORTHO05D002552 8.2e-10 66.6 60 56.7
C04p35750 Brassica napus HOM05D000274 ORTHO05D002552 8.2e-10 66.6 60 56.7
BolC4t25226H Brassica oleracea HOM05D000274 ORTHO05D002552 8.2e-10 66.6 60 56.7
BolC7t41719H Brassica oleracea HOM05D000274 ORTHO05D002552 8.2e-10 66.6 70 51.4
HanXRQChr02g0052561 Helianthus annuus HOM05D000274 ORTHO05D002552 8.2e-10 66.6 62 62.9
EL10As15g24108 Beta vulgaris HOM05D000274 ORTHO05D002552 1.1e-09 66.2 66 54.5
Gorai.010G129800 Gossypium raimondii HOM05D000274 ORTHO05D002552 1.4e-09 65.9 56 66.1
BolSC29t60479H Brassica oleracea HOM05D000274 ORTHO05D002552 1.8e-09 65.5 69 50.7
Gohir.1Z049602 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.8e-09 65.5 36 86.1
Medtr4g077730 Medicago truncatula HOM05D000274 ORTHO05D002552 1.8e-09 65.5 71 46.5
arahy.Tifrunner.gnm1.ann1.M2WIVZ Arachis hypogaea HOM05D000274 ORTHO05D002552 2.4e-09 65.1 60 58.3
MBI16_g04458_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 2.4e-09 65.1 59 61.0
Gohir.1Z050580 Gossypium hirsutum HOM05D000274 ORTHO05D002552 4.0e-09 64.3 53 67.9
PGSC0003DMG402022617 Solanum tuberosum HOM05D000274 ORTHO05D002552 4.0e-09 64.3 61 52.5
Gohir.D12G107600 Gossypium hirsutum HOM05D000274 ORTHO05D002552 5.3e-09 63.9 36 83.3
Lsat_1_v5_gn_5_50301 Lactuca sativa HOM05D000274 ORTHO05D002552 5.3e-09 63.9 57 59.6
CAN.G702.46 Capsicum annuum HOM05D000743 ORTHO05D000580 9.0e-09 63.2 74 48.6
Glyma.20G048700 Glycine max HOM05D000274 ORTHO05D002552 3.4e-08 61.2 56 58.9
Glyma.18G132600 Glycine max HOM05D000274 ORTHO05D002552 1.0e-07 59.7 35 74.3
Solyc00g500070.1 Solanum lycopersicum HOM05D000274 ORTHO05D002552 1.0e-07 59.7 58 53.4
BraSC103t45453Z Brassica rapa HOM05D000274 ORTHO05D002552 1.3e-07 59.3 43 65.1
Gorai.012G094800 Gossypium raimondii HOM05D007792 ORTHO05D009931 1.3e-07 59.3 36 77.8
CAN.G648.4 Capsicum annuum HOM05D000274 ORTHO05D002552 1.7e-07 58.9 68 47.1
Gohir.D04G084960 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.2e-07 58.5 36 75.0
BraSC58t46495Z Brassica rapa HOM05D000274 ORTHO05D002552 3.8e-07 57.8 35 74.3
Lsat_1_v5_gn_2_43961 Lactuca sativa HOM05D000274 ORTHO05D002552 6.5e-07 57.0 60 53.3
Gohir.D12G266650 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.1e-06 56.2 36 72.2
Oeu028774.1 Olea europaea HOM05D000274 ORTHO05D002552 3.2e-06 54.7 33 75.8
HPP92_022278 Vanilla planifolia HOM05D000274 ORTHO05D002552 3.2e-06 54.7 73 41.1
HanXRQChr00c0557g0575781 Helianthus annuus HOM05D000274 ORTHO05D002552 4.2e-06 54.3 58 55.2
Eucgr.A00489 Eucalyptus grandis HOM05D000274 ORTHO05D002552 7.1e-06 53.5 65 49.2
Potri.002G178801 Populus trichocarpa HOM05D000274 ORTHO05D002552 7.1e-06 53.5 65 44.6
HPP92_028400 Vanilla planifolia HOM05D000274 ORTHO05D002552 7.1e-06 53.5 73 39.7
HPP92_028425 Vanilla planifolia HOM05D000274 ORTHO05D002552 7.1e-06 53.5 73 39.7


User provided reference genes

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