Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1691.8 838 100.0
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1671.4 838 98.9
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1660.2 838 98.3
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1497.3 838 88.3
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1474.9 838 86.6
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1411.7 837 83.2
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1397.1 838 82.0
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1381.3 838 80.9
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1378.2 838 81.0
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1377.5 838 81.3
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1377.5 840 81.4
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1374.8 838 80.9
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1370.1 838 80.2
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1366.3 838 79.8
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1362.8 840 80.1
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1362.1 839 80.0
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1361.3 838 80.2
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1361.3 838 80.2
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1359.4 838 79.5
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1359.0 839 79.6
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1353.2 838 79.4
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1352.0 838 79.7
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1351.7 868 78.5
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1348.2 838 79.7
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1346.6 838 79.4
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1345.9 840 79.8
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1345.5 838 78.8
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1344.7 839 79.3
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1342.8 838 78.5
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 838 78.9
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 858 78.3
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1337.4 838 78.8
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 839 79.6
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1334.7 838 78.8
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1334.3 838 78.6
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1332.0 826 78.9
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1331.2 838 78.2
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1330.9 838 78.4
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1330.5 838 79.0
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1328.5 838 78.5
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1328.2 839 78.4
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1327.4 838 77.0
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 838 78.9
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1325.8 839 77.9
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1325.5 838 77.9
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 838 78.3
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 838 77.7
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 839 78.2
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 839 78.4
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 839 78.3
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1321.2 830 78.9
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1319.7 838 77.6
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1318.9 915 73.9
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1318.1 839 77.9
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 838 77.3
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1316.6 845 77.2
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1316.2 840 77.7
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 838 77.1
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 845 77.0
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1313.1 845 77.0
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1310.4 838 76.8
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1310.0 838 78.4
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1308.5 838 76.8
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1307.7 838 76.6
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1305.4 870 75.6
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1301.2 838 79.0
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 838 77.2
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 844 78.0
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1297.3 841 75.9
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1296.2 851 76.5
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1293.9 845 76.4
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1289.6 838 76.8
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1288.1 911 71.5
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1286.6 904 72.3
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1285.8 967 69.2
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1285.8 843 74.7
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1282.3 819 78.3
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1282.3 858 74.9
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1280.4 838 77.2
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1275.8 911 71.6
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1268.4 825 77.1
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1246.5 826 74.9
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1243.0 867 72.5
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1239.9 764 79.2
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1231.1 778 77.6
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1230.7 842 74.3
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1229.5 781 76.8
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1226.8 788 76.3
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1219.1 766 78.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1212.2 839 73.8
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1206.4 751 79.5
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1202.2 776 77.2
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1196.4 842 73.3
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1190.3 859 69.0
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1188.7 839 69.6
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1155.2 823 69.0
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1148.3 748 75.3
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1144.0 844 67.3
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1138.3 691 81.2
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1118.6 855 65.4
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1110.5 697 77.6
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1096.6 838 67.2
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1092.8 839 66.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 0.0e+00 1078.5 839 64.2
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 2.3e-311 1072.0 857 63.7
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.4e-300 1035.4 654 78.1
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 2.0e-270 936.0 845 60.4
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.8e-255 886.3 642 70.9
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 2.1e-235 819.7 542 73.4
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 1.4e-212 743.8 513 71.2
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 8.4e-205 718.0 418 84.4
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.4e-159 567.8 329 84.5
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-120 438.3 304 76.3
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.7e-115 419.9 254 81.9
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.0e-113 414.5 307 64.2
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.4e-103 381.7 285 68.1
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.9e-95 354.8 196 87.2
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 2.2e-88 331.3 263 65.4
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-85 322.0 388 49.5
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 6.3e-67 260.0 275 54.5
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.7e-64 251.9 182 70.3
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.1e-50 206.1 139 75.5
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.7e-48 198.7 140 68.6
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 1.2e-41 176.0 117 74.4
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.5e-36 159.1 176 51.7
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 7.5e-36 156.8 83 86.7
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 9.8e-36 156.4 94 78.7
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 1.2e-28 132.9 82 80.5
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 1.1e-26 126.3 85 67.1
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 2.7e-25 121.7 74 82.4
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 4.6e-25 120.9 84 71.4
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.3e-23 114.8 76 69.7
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 3.4e-20 104.8 66 78.8
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.5e-15 89.4 68 60.3
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 5.6e-15 87.4 105 53.3
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.2e-10 71.6 42 85.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 6.0e-09 67.4 50 64.0
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 2.1e-06 58.9 126 31.7


User provided reference genes

Program Settings