Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G168800 Gossypium raimondii HOM05D002599 ORTHO05D036327 3.5e-85 318.2 151 100.0
Gorai.012G169100 Gossypium raimondii HOM05D002599 ORTHO05D036327 5.1e-84 314.3 151 98.0
Gohir.D04G176582 Gossypium hirsutum HOM05D002599 ORTHO05D036327 1.5e-83 312.8 151 97.4
Gohir.D04G176498 Gossypium hirsutum HOM05D002599 ORTHO05D047810 2.4e-73 278.9 142 91.5
Gorai.012G168900 Gossypium raimondii HOM05D002599 ORTHO05D047810 5.2e-73 277.7 142 91.5
Gohir.A04G133451 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.4e-71 270.8 142 89.4
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 6.1e-29 131.3 142 51.4
Gorai.012G167700 Gossypium raimondii HOM05D002599 ORTHO05D012670 5.1e-28 128.3 142 50.7
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 1.1e-27 127.1 138 50.0
Gohir.D04G176484 Gossypium hirsutum HOM05D002599 ORTHO05D029872 1.5e-27 126.7 138 49.3
Gohir.D04G176200 Gossypium hirsutum HOM05D002599 ORTHO05D012670 2.6e-27 125.9 142 50.0
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 1.4e-25 120.2 142 49.3
Gorai.012G169000 Gossypium raimondii HOM05D002599 ORTHO05D029872 5.3e-25 118.2 127 49.6
Gohir.D04G176066 Gossypium hirsutum HOM05D002599 ORTHO05D047328 5.9e-24 114.8 128 49.2
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 1.0e-23 114.0 138 46.4
Gorai.012G167600 Gossypium raimondii HOM05D002599 ORTHO05D047328 1.0e-23 114.0 128 49.2
Gohir.D04G176526 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-22 110.2 119 48.7
Gohir.D04G176428 Gossypium hirsutum HOM05D002599 ORTHO05D036187 4.2e-22 108.6 120 47.5
Gorai.012G168400 Gossypium raimondii HOM05D002599 ORTHO05D036187 5.5e-22 108.2 120 47.5
Thecc.02G024100 Theobroma cacao HOM05D002599 ORTHO05D012670 5.5e-22 108.2 134 44.0
Gohir.A04G133075 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.4e-22 107.5 120 49.2
Thecc.02G021800 Theobroma cacao HOM05D002599 ORTHO05D012670 1.2e-21 107.1 127 44.1
Gorai.012G168100 Gossypium raimondii HOM05D002599 ORTHO05D036187 2.1e-21 106.3 115 51.3
Gorai.012G167800 Gossypium raimondii HOM05D002599 ORTHO05D012670 4.7e-21 105.1 110 49.1
Thecc.02G022600 Theobroma cacao HOM05D002599 ORTHO05D012670 7.9e-21 104.4 127 44.1
Thecc.02G024300 Theobroma cacao HOM05D002599 ORTHO05D012670 1.4e-20 103.6 138 44.2
Gorai.002G215700 Gossypium raimondii HOM05D002599 ORTHO05D012670 2.3e-20 102.8 103 48.5
Gohir.D01G173600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.0e-20 102.4 103 48.5
Gohir.A01G182540 Gossypium hirsutum HOM05D002599 ORTHO05D012670 6.7e-20 101.3 109 46.8
Gohir.D04G176250 Gossypium hirsutum HOM05D002599 ORTHO05D012670 8.8e-20 100.9 121 45.5
Gohir.D04G176554 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-19 100.5 109 48.6
Thecc.02G022200 Theobroma cacao HOM05D002599 ORTHO05D012670 1.1e-19 100.5 134 41.0
Thecc.02G022700 Theobroma cacao HOM05D002599 ORTHO05D012670 1.5e-19 100.1 127 42.5
Thecc.02G023200 Theobroma cacao HOM05D002599 ORTHO05D012670 2.6e-19 99.4 128 42.2
Gohir.A04G133401 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.4e-19 98.6 106 47.2
Gohir.D04G176470 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.4e-19 98.6 108 48.1
Thecc.02G022300 Theobroma cacao HOM05D002599 ORTHO05D012670 1.7e-18 96.7 100 47.0
Gohir.A04G133251 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.2e-18 94.4 106 47.2
COL.COLO4_17741 Corchorus olitorius HOM05D001654 ORTHO05D002773 1.8e-17 93.2 101 43.6
COL.COLO4_17742 Corchorus olitorius HOM05D002599 ORTHO05D012670 1.8e-17 93.2 120 44.2
Gorai.012G168300 Gossypium raimondii HOM05D002599 ORTHO05D047846 2.4e-17 92.8 104 48.1
Gohir.D04G176456 Gossypium hirsutum HOM05D002599 ORTHO05D036100 5.3e-17 91.7 106 44.3
Gohir.D04G176540 Gossypium hirsutum HOM05D002599 ORTHO05D036100 1.2e-16 90.5 142 36.6
Gorai.012G168500 Gossypium raimondii HOM05D002599 ORTHO05D036100 1.6e-16 90.1 142 36.6
Gohir.A04G133025 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.5e-16 89.0 106 45.3
COL.COLO4_17749 Corchorus olitorius HOM05D002599 ORTHO05D012670 5.9e-16 88.2 103 43.7
Gohir.A04G133650 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-14 83.6 106 41.5
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.9e-14 83.2 133 38.3
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.2e-14 82.4 98 39.8
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-13 79.7 129 37.2
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.7e-13 79.3 129 37.2
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 6.1e-13 78.2 101 40.6
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 6.1e-13 78.2 98 39.8
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 8.0e-13 77.8 103 42.7
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-12 77.4 101 40.6
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.4e-12 77.0 104 39.4
Gohir.D04G175900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-12 76.6 102 43.1
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.8e-12 76.6 101 40.6
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-12 76.6 113 38.1
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-12 75.9 101 39.6
Gohir.D04G176414 Gossypium hirsutum HOM05D002599 ORTHO05D047846 5.2e-12 75.1 99 41.4
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.2e-12 75.1 102 42.2
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.2e-12 75.1 103 42.7
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 6.7e-12 74.7 101 39.6
Gorai.012G169400 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.8e-12 74.3 105 40.0
Manes.07G021500 Manihot esculenta HOM05D002599 ORTHO05D001895 8.8e-12 74.3 101 39.6
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.2e-11 73.9 102 40.2
COL.COLO4_29046 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.5e-11 73.6 87 40.2
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-11 73.2 105 40.0
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-11 72.8 101 33.7
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.6e-11 72.8 101 33.7
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.3e-11 72.4 101 39.6
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-11 72.0 101 32.7
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-11 71.6 103 35.9
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-11 71.6 103 36.9
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.7e-11 71.6 103 36.9
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 5.7e-11 71.6 104 36.5
Gohir.A04G130700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.5e-11 71.2 102 39.2
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 7.5e-11 71.2 106 35.8
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 9.7e-11 70.9 104 35.6
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 1.3e-10 70.5 91 44.0
Manes.07G021600 Manihot esculenta HOM05D002599 ORTHO05D001895 1.7e-10 70.1 107 41.1
Potri.015G015650 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-10 70.1 89 39.3
Sabra15G0012000 Salix brachista HOM05D002599 ORTHO05D001895 2.2e-10 69.7 97 40.2
Sabra12G0018200 Salix brachista HOM05D002599 ORTHO05D001895 2.8e-10 69.3 102 36.3
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-10 69.3 101 32.7
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-10 69.3 112 37.5
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-10 69.3 90 41.1
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 4.8e-10 68.6 101 37.6
Gohir.A04G130724 Gossypium hirsutum HOM05D002599 ORTHO05D012670 4.8e-10 68.6 110 40.0
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.8e-10 68.6 85 42.4
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.8e-10 68.6 104 37.5
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 4.8e-10 68.6 101 37.6
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.3e-10 68.2 100 37.0
COL.COLO4_29044 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.2e-10 67.8 86 39.5
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.2e-10 67.8 102 38.2
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.2e-10 67.8 85 43.5
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.2e-10 67.8 103 40.8
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.2e-10 67.8 88 38.6
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-09 67.4 96 37.5
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-09 67.4 96 37.5
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-09 67.4 96 37.5
Thecc.04G013500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.8e-09 66.6 92 39.1
COL.COLO4_29532 Corchorus olitorius HOM05D002599 ORTHO05D025152 2.4e-09 66.2 139 31.7
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.1e-09 65.5 100 37.0
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.1e-09 65.5 100 37.0
Potri.015G015800 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.1e-09 65.5 102 40.2
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 7.0e-09 64.7 89 39.3
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 7.0e-09 64.7 100 36.0
Duzib187G0682 Durio zibethinus HOM05D002599 ORTHO05D001895 9.1e-09 64.3 84 36.9
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.1e-09 64.3 100 39.0
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-08 63.9 89 36.0
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-08 63.5 106 34.9
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-08 63.2 108 35.2
Sabra01G0165000 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-08 63.2 88 36.4
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 2.0e-08 63.2 94 36.2
COL.COLO4_17753 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.7e-08 62.8 99 36.4
COL.COLO4_17743 Corchorus olitorius HOM05D002599 ORTHO05D157454 3.5e-08 62.4 70 48.6
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 3.5e-08 62.4 101 34.7
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.5e-08 62.0 106 34.9
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.5e-08 62.0 108 35.2
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 5.9e-08 61.6 102 40.2
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 5.9e-08 61.6 101 32.7
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.7e-08 61.2 108 35.2
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-07 60.1 103 35.0
Gohir.A01G200500 Gossypium hirsutum HOM05D002599 ORTHO05D025152 2.2e-07 59.7 133 31.6
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.5e-07 57.8 83 38.6
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-06 57.4 102 33.3
Gohir.D01G190550 Gossypium hirsutum HOM05D002599 ORTHO05D025152 1.1e-06 57.4 133 32.3
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-06 57.4 105 32.4
Gorai.002G234300 Gossypium raimondii HOM05D002599 ORTHO05D025152 1.1e-06 57.4 133 30.8
Manes.10G124912 Manihot esculenta HOM05D002599 ORTHO05D001895 1.1e-06 57.4 93 36.6
Prupe.1G574300 Prunus persica HOM05D002599 ORTHO05D001895 1.1e-06 57.4 90 35.6
Sabra15G0010100 Salix brachista HOM05D002599 ORTHO05D001895 1.1e-06 57.4 95 34.7
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.5e-06 57.0 88 36.4
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 1.5e-06 57.0 90 37.8
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-06 57.0 100 33.0
Sabra03G0008700 Salix brachista HOM05D002599 ORTHO05D001895 1.9e-06 56.6 90 37.8
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 1.9e-06 56.6 136 33.8
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-06 56.2 84 39.3
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.5e-06 56.2 90 36.7
Thecc.04G013400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.5e-06 56.2 87 39.1
COL.COLO4_11744 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.2e-06 55.8 56 42.9
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.2e-06 55.8 105 32.4
Gorai.012G151200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.2e-06 55.8 106 34.0
Gorai.012G169200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.2e-06 55.8 69 40.6
Sabra03G0006600 Salix brachista HOM05D009888 ORTHO05D001895 4.2e-06 55.5 104 37.5
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 4.2e-06 55.5 90 42.2
Gohir.D04G163166 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.5e-06 55.1 103 33.0
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-06 55.1 103 35.0
Potri.015G126301 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.5e-06 55.1 101 30.7
AUR62019864 Chenopodium quinoa HOM05D002599 ORTHO05D001895 7.2e-06 54.7 112 32.1
Potri.003G011250 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.2e-06 54.7 103 37.9
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 7.2e-06 54.7 84 36.9
Atru.chr6.323 Acer truncatum HOM05D002599 ORTHO05D001895 9.4e-06 54.3 101 34.7
Gohir.A04G121884 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.4e-06 54.3 103 33.0
Sabra01G0164100 Salix brachista HOM05D002599 ORTHO05D001895 9.4e-06 54.3 92 35.9
Sabra03G0006300 Salix brachista HOM05D016764 ORTHO05D001895 9.4e-06 54.3 113 33.6


User provided reference genes

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