Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G163600 Gossypium raimondii HOM05D001022 ORTHO05D000825 2.2e-42 175.3 91 100.0
Gohir.A04G129100 Gossypium hirsutum HOM05D001022 ORTHO05D000825 1.5e-38 162.5 91 93.4
Gohir.D04G174200 Gossypium hirsutum HOM05D001022 ORTHO05D000825 5.6e-38 160.6 91 93.4
COL.COLO4_17794 Corchorus olitorius HOM05D001022 ORTHO05D000825 1.8e-15 85.9 113 50.4
Thecc.02G030900 Theobroma cacao HOM05D001022 ORTHO05D000825 4.3e-14 81.3 76 61.8
Gohir.D02G235200 Gossypium hirsutum HOM05D001022 ORTHO05D000825 2.2e-13 79.0 62 66.1
Gohir.A03G213700 Gossypium hirsutum HOM05D001022 ORTHO05D000825 4.8e-13 77.8 62 66.1
Gorai.005G263300 Gossypium raimondii HOM05D001022 ORTHO05D000825 2.0e-11 72.4 61 63.9
Ciclev10029512m.g Citrus clementina HOM05D001022 ORTHO05D000825 7.7e-11 70.5 91 46.2
Lj9C365T10 Lonicera japonica HOM05D001022 ORTHO05D000825 2.2e-10 68.9 89 49.4
Manes.17G098100 Manihot esculenta HOM05D001022 ORTHO05D000825 5.0e-10 67.8 66 59.1
Manes.15G147000 Manihot esculenta HOM05D001022 ORTHO05D000825 1.1e-09 66.6 77 48.1
Medtr4g068850 Medicago truncatula HOM05D001022 ORTHO05D000825 1.9e-09 65.9 83 51.8
Sabra04G0099600 Salix brachista HOM05D001022 ORTHO05D000825 2.5e-09 65.5 65 56.9
Atru.chr5.2913 Acer truncatum HOM05D001022 ORTHO05D000825 3.2e-09 65.1 51 68.6
AUR62011382 Chenopodium quinoa HOM05D001022 ORTHO05D000825 7.2e-09 63.9 78 48.7
PGR042G0153 Punica granatum HOM05D001022 ORTHO05D000825 9.4e-09 63.5 47 68.1
Cfa021517 Carpinus fangiana HOM05D001022 ORTHO05D000825 1.6e-08 62.8 73 53.4
arahy.Tifrunner.gnm1.ann1.WZE4UT Arachis hypogaea HOM05D001022 ORTHO05D000825 2.1e-08 62.4 75 52.0
CiPaw.06G138300 Carya illinoinensis HOM05D001022 ORTHO05D000825 2.1e-08 62.4 51 64.7
arahy.Tifrunner.gnm1.ann1.D10I8V Arachis hypogaea HOM05D001022 ORTHO05D000825 2.7e-08 62.0 75 52.0
Lj9P365T34 Lonicera japonica HOM05D001022 ORTHO05D000825 2.7e-08 62.0 47 68.1
RcHm_v2.0_Chr6g0271961 Rosa chinensis HOM05D001022 ORTHO05D000825 2.7e-08 62.0 82 48.8
Ah.01g019720 Amaranthus hybridus HOM05D001022 ORTHO05D000825 3.6e-08 61.6 97 42.3
Psat7g205840 Pisum sativum HOM05D001022 ORTHO05D000825 3.6e-08 61.6 65 52.3
Sabra09G0084400 Salix brachista HOM05D001022 ORTHO05D000825 3.6e-08 61.6 47 70.2
TAR625G0881 Trochodendron aralioides HOM05D001022 ORTHO05D000825 3.6e-08 61.6 92 43.5
AUR62016677 Chenopodium quinoa HOM05D001022 ORTHO05D000825 6.1e-08 60.8 78 47.4
Prupe.8G107400 Prunus persica HOM05D001022 ORTHO05D000825 6.1e-08 60.8 64 54.7
CiPaw.05G059900 Carya illinoinensis HOM05D001022 ORTHO05D000825 7.9e-08 60.5 66 54.5
Dinv23566 Davidia involucrata HOM05D001022 ORTHO05D000825 7.9e-08 60.5 75 44.0
QL11p039675 Quercus lobata HOM05D001022 ORTHO05D000825 7.9e-08 60.5 46 67.4
Haze_02432 Corylus avellana HOM05D001022 ORTHO05D000825 1.0e-07 60.1 46 65.2
RcHm_v2.0_Chr6g0262091 Rosa chinensis HOM05D001022 ORTHO05D000825 1.0e-07 60.1 83 45.8
Eucgr.G00487 Eucalyptus grandis HOM05D001022 ORTHO05D000825 1.4e-07 59.7 81 48.1
Potri.009G110700 Populus trichocarpa HOM05D001022 ORTHO05D000825 1.4e-07 59.7 47 68.1
QL11p039652 Quercus lobata HOM05D001022 ORTHO05D000825 1.8e-07 59.3 66 53.0
Hma1.2p1_0584F.1_g183420 Hydrangea macrophylla HOM05D001022 ORTHO05D000825 2.3e-07 58.9 89 42.7
QL11p039636 Quercus lobata HOM05D001022 ORTHO05D000825 3.9e-07 58.2 66 50.0
Rhsim11G0172500 Rhododendron simsii HOM05D001022 ORTHO05D000825 3.9e-07 58.2 60 53.3
EL10Ac9g21775 Beta vulgaris HOM05D001022 ORTHO05D000825 5.1e-07 57.8 78 43.6
Potri.004G149800 Populus trichocarpa HOM05D001022 ORTHO05D000825 5.1e-07 57.8 61 50.8
HanXRQChr04g0128501 Helianthus annuus HOM05D001022 ORTHO05D000825 6.7e-07 57.4 50 60.0
TPR.G29889 Trifolium pratense HOM05D001022 ORTHO05D000825 6.7e-07 57.4 69 46.4
Eucgr.G00484 Eucalyptus grandis HOM05D001022 ORTHO05D000825 8.8e-07 57.0 47 63.8
ECA240G4642 Erigeron canadensis HOM05D001022 ORTHO05D000825 1.1e-06 56.6 45 62.2
MD10G1084100 Malus domestica HOM05D001022 ORTHO05D000825 1.1e-06 56.6 83 47.0
Eucgr.G00481 Eucalyptus grandis HOM05D001022 ORTHO05D000825 1.5e-06 56.2 47 66.0
Eucgr.G00482 Eucalyptus grandis HOM05D001022 ORTHO05D000825 1.5e-06 56.2 47 66.0
Eucgr.G01889 Eucalyptus grandis HOM05D001022 ORTHO05D000825 2.0e-06 55.8 81 46.9
HanXRQChr03g0074381 Helianthus annuus HOM05D001022 ORTHO05D000825 2.0e-06 55.8 51 58.8
FAN24G3202 Fragaria x ananassa HOM05D001022 ORTHO05D000825 2.6e-06 55.5 83 44.6
Lj3g0008545 Lotus japonicus HOM05D001022 ORTHO05D000825 2.6e-06 55.5 69 43.5
vmacro02152 Vaccinium macrocarpon HOM05D001022 ORTHO05D000825 2.6e-06 55.5 60 50.0
Nn1g05141 Nelumbo nucifera HOM05D001022 ORTHO05D000825 3.3e-06 55.1 74 47.3
PGSC0003DMG400025163 Solanum tuberosum HOM05D001022 ORTHO05D000825 3.3e-06 55.1 47 55.3
Actinidia17834 Actinidia chinensis HOM05D001022 ORTHO05D000825 4.4e-06 54.7 46 58.7
Glyma.12G046800 Glycine max HOM05D001022 ORTHO05D000825 4.4e-06 54.7 69 44.9
Solyc01g109250.2 Solanum lycopersicum HOM05D001022 ORTHO05D000825 4.4e-06 54.7 58 50.0
Sopen01g051410 Solanum pennellii HOM05D001022 ORTHO05D000825 4.4e-06 54.7 58 50.0
Eucgr.G00485 Eucalyptus grandis HOM05D001022 ORTHO05D000825 5.7e-06 54.3 81 45.7
Atru.chr5.2914 Acer truncatum HOM05D001022 ORTHO05D000825 7.4e-06 53.9 46 60.9
CSS0038502 Camellia sinensis var. sinensis HOM05D001022 ORTHO05D000825 7.4e-06 53.9 47 57.4
Glyma.11G121900 Glycine max HOM05D001022 ORTHO05D000825 7.4e-06 53.9 47 57.4


User provided reference genes

Program Settings