Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.1e-259 899.4 450 100.0
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.2e-258 896.0 450 99.8
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.6e-256 887.1 450 98.9
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.4e-227 792.7 456 87.1
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.2e-227 790.4 456 86.8
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.2e-226 789.6 456 86.8
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.6e-226 789.3 456 86.2
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 3.6e-226 788.1 456 86.6
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 8.8e-225 783.5 456 85.7
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.8e-209 732.6 456 79.6
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 2.6e-208 728.8 457 79.2
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 9.7e-208 726.9 458 77.9
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.3e-207 726.5 444 80.6
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.1e-206 723.4 456 78.7
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.8e-206 722.6 441 79.1
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 3.1e-206 721.8 458 77.5
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 4.1e-206 721.5 458 77.1
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 2.0e-205 719.2 458 77.3
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.3e-204 716.5 457 77.9
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 1.7e-204 716.1 457 77.2
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 3.8e-204 714.9 457 77.7
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.5e-203 713.0 456 77.9
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.9e-203 712.6 456 77.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 3.2e-203 711.8 441 78.9
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.2e-203 711.8 459 77.8
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 5.5e-203 711.1 440 79.8
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.2e-202 709.9 422 82.7
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 6.1e-202 707.6 446 78.5
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 6.1e-202 707.6 446 78.5
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 1.0e-201 706.8 441 80.0
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.3e-201 705.7 446 78.0
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.0e-201 705.3 446 78.3
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 3.0e-201 705.3 456 76.1
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 4.0e-201 704.9 438 77.9
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 8.8e-201 703.7 457 76.4
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 3.4e-200 701.8 460 75.0
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 4.4e-200 701.4 457 76.8
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 2.8e-199 698.7 443 76.1
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.8e-199 698.0 439 79.5
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.3e-199 697.2 456 76.1
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.8e-198 696.0 440 77.0
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.4e-198 695.7 445 77.5
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 4.1e-198 694.9 454 76.0
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 7.0e-198 694.1 441 77.1
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.0e-197 692.6 446 77.8
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.7e-197 692.2 453 75.5
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.5e-197 691.4 423 79.2
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.9e-197 691.0 446 77.8
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 7.7e-197 690.6 456 74.3
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.3e-196 689.9 442 77.6
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.3e-196 689.9 454 75.6
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.7e-196 689.5 458 76.2
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.7e-196 689.5 443 76.3
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 3.8e-196 688.3 447 77.4
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 3.8e-196 688.3 437 78.0
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 5.0e-196 688.0 437 77.3
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.5e-196 687.6 462 74.7
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 6.5e-196 687.6 447 76.7
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.1e-195 686.8 423 79.9
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.5e-195 686.4 441 76.6
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 4.2e-195 684.9 447 76.5
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.2e-195 684.9 431 77.0
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.2e-195 684.9 431 77.0
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 5.5e-195 684.5 423 79.7
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 5.5e-195 684.5 447 77.0
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 7.2e-195 684.1 445 76.9
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.6e-194 682.9 423 79.2
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.6e-194 682.9 423 79.2
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.6e-194 682.9 445 76.2
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 3.6e-194 681.8 423 79.0
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 3.6e-194 681.8 423 79.0
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 3.6e-194 681.8 467 73.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 4.7e-194 681.4 427 78.7
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 6.1e-194 681.0 423 79.0
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 6.1e-194 681.0 456 73.9
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 6.1e-194 681.0 445 76.0
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.0e-193 680.2 432 78.2
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 3.0e-193 678.7 420 78.6
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 6.8e-193 677.6 457 74.2
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 2.6e-192 675.6 458 73.4
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 2.6e-192 675.6 422 77.7
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.7e-192 674.5 449 74.8
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.3e-191 673.3 425 78.4
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 2.2e-191 672.5 457 74.0
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 3.7e-191 671.8 436 76.8
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 3.7e-191 671.8 467 72.4
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.1e-190 670.2 457 74.8
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.4e-190 669.1 468 72.6
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 4.1e-190 668.3 470 73.6
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 5.4e-190 667.9 468 73.5
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.2e-189 666.8 457 72.2
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 7.8e-189 664.1 479 70.6
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.0e-188 663.7 453 74.2
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 2.9e-188 662.1 467 71.7
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 5.6e-187 657.9 453 71.5
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 7.3e-187 657.5 456 73.5
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 4.7e-186 654.8 453 71.7
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.0e-185 653.7 473 71.2
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.0e-185 653.7 470 71.1
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.4e-185 653.3 437 75.5
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.8e-185 652.9 442 72.6
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 5.2e-177 624.8 564 59.9
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.8e-177 624.4 447 70.5
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 7.5e-176 620.9 423 72.8
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 8.3e-175 617.5 495 65.5
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-174 617.1 390 76.9
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 9.2e-174 614.0 448 69.2
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.2e-173 613.6 430 69.5
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.7e-173 612.5 421 71.7
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 5.0e-172 608.2 424 70.5
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 2.5e-171 605.9 461 67.0
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.3e-171 605.5 424 70.5
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 9.5e-171 604.0 442 67.4
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 8.9e-169 597.4 424 70.0
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.4e-168 595.1 427 69.6
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 3.2e-166 589.0 452 67.0
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.6e-162 576.6 408 70.6
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.4e-158 562.8 404 68.8
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.1e-158 561.2 431 65.2
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.5e-155 553.5 444 65.1
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.9e-155 553.1 372 74.2
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 7.6e-152 541.2 366 74.9
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.9e-148 528.9 397 69.3
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 6.9e-145 518.1 442 58.4
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 4.6e-141 505.4 351 70.1
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.8e-140 503.4 456 58.8
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.7e-140 501.5 442 59.7
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.3e-139 499.2 351 71.2
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 3.4e-136 489.2 414 60.6
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 2.2e-135 486.5 419 59.9
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 2.9e-135 486.1 396 62.4
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.6e-133 480.3 317 74.1
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.6e-122 443.7 391 59.3
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.3e-107 392.9 290 66.2
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.2e-102 376.3 336 59.8
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 4.8e-90 335.9 257 66.1
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.1e-89 334.7 211 79.6
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.0e-88 330.5 260 65.8
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.6e-85 320.9 208 77.9
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.6e-80 304.3 425 43.1
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.3e-74 284.6 197 72.1
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 3.4e-67 260.0 180 73.9
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 6.2e-53 212.6 154 72.1
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 2.7e-48 197.2 138 71.0
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.3e-39 167.5 229 45.4
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 4.0e-36 156.8 150 55.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 5.4e-33 146.4 149 55.7
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 5.6e-22 109.8 61 88.5
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.1e-12 77.4 56 62.5
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 2.5e-06 57.8 88 42.0


User provided reference genes

Program Settings