Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.8e-154 548.5 266 100.0
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.8e-154 548.5 266 100.0
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.1e-153 544.7 266 99.2
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 2.2e-135 485.7 271 88.6
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 2.5e-126 455.7 271 84.9
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 3.3e-123 445.3 272 82.4
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 3.3e-123 445.3 275 80.7
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.2e-93 347.1 277 68.6
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 3.1e-92 342.4 278 69.1
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.9e-90 335.9 269 69.5
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.4e-90 334.7 269 69.9
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.9e-89 333.2 298 63.1
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 3.5e-88 328.9 282 68.1
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.0e-87 325.9 275 67.6
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 7.3e-86 321.2 286 64.0
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.6e-85 320.1 285 64.9
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 4.7e-85 318.5 246 70.7
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 6.2e-85 318.2 280 65.0
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.7e-82 310.1 285 61.4
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 7.8e-80 301.2 293 62.5
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.0e-79 300.8 287 59.2
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.9e-79 298.9 295 60.7
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.1e-77 293.1 288 60.1
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 5.4e-73 278.5 279 61.6
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 2.3e-71 273.1 300 60.0
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 3.9e-71 272.3 281 60.5
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 5.1e-71 271.9 260 65.4
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 6.6e-71 271.6 279 59.1
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 8.6e-71 271.2 292 57.9
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 7.3e-70 268.1 275 60.7
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.6e-69 266.9 290 59.7
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 3.6e-69 265.8 286 59.1
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 5.2e-68 261.9 293 54.3
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 5.2e-68 261.9 288 56.9
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.2e-67 260.8 267 59.2
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.4e-67 258.8 289 54.3
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 9.9e-67 257.7 294 56.8
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 4.9e-66 255.4 262 56.1
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 3.2e-65 252.7 281 57.7
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 3.2e-65 252.7 316 57.0
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 5.4e-65 251.9 256 58.6
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 2.1e-64 250.0 318 54.1
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.0e-63 247.7 230 62.2
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.3e-63 246.5 285 55.1
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 9.6e-62 241.1 278 56.1
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.6e-61 240.4 223 60.5
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.1e-61 240.0 317 51.4
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 4.8e-61 238.8 285 54.7
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.4e-60 237.3 278 54.7
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 6.9e-60 235.0 268 52.2
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.2e-59 234.2 340 50.9
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.2e-59 234.2 340 50.9
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 4.5e-59 232.3 278 55.8
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 5.8e-59 231.9 205 64.9
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.3e-58 230.7 287 56.4
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.9e-58 229.6 347 49.9
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 8.4e-58 228.0 266 57.5
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.9e-57 226.9 280 53.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.3e-55 219.9 252 56.3
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.0e-55 219.5 280 51.8
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 5.1e-55 218.8 260 56.9
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.5e-54 217.2 249 54.2
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 3.3e-54 216.1 255 55.3
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 2.8e-53 213.0 267 51.3
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 8.1e-53 211.5 247 54.7
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.1e-52 211.1 320 48.4
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.5e-51 207.2 214 57.9
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 1.5e-51 207.2 248 54.4
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 2.2e-50 203.4 282 48.6
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.1e-49 201.1 273 50.9
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.1e-46 191.0 289 47.8
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.1e-46 191.0 210 56.2
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.5e-46 190.7 341 44.3
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.9e-46 190.3 235 48.9
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.3e-46 189.1 275 50.5
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 7.4e-46 188.3 219 53.9
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 2.8e-45 186.4 241 51.5
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 1.1e-44 184.5 295 46.8
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.4e-44 184.1 304 47.0
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.8e-44 183.7 277 48.7
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.8e-44 183.7 229 52.8
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 2.4e-44 183.3 273 46.5
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 4.0e-44 182.6 258 51.2
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 5.3e-44 182.2 238 51.3
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 5.3e-44 182.2 261 48.7
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 9.0e-44 181.4 304 47.0
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 2.6e-43 179.9 279 48.7
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 2.6e-43 179.9 279 48.7
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 4.5e-43 179.1 221 54.8
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 4.5e-43 179.1 271 46.5
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 7.6e-43 178.3 271 48.3
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.0e-42 177.9 278 48.6
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.0e-42 177.9 273 46.9
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.3e-42 177.6 219 53.0
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 3.8e-42 176.0 279 48.7
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 3.8e-42 176.0 220 52.7
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.5e-41 173.3 279 48.4
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.2e-40 171.0 233 50.2
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.0e-39 167.9 235 45.5
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 1.8e-39 167.2 210 52.4
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.7e-38 162.2 285 43.9
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 5.7e-38 162.2 279 41.6
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 9.7e-38 161.4 197 52.8
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.6e-37 160.6 195 51.8
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 3.7e-37 159.5 229 49.8
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 8.2e-37 158.3 221 49.3
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.1e-36 157.9 272 44.5
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-36 157.5 220 50.0
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.5e-35 154.1 230 47.0
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.5e-35 154.1 218 50.5
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 2.5e-33 146.7 216 48.1
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 7.2e-33 145.2 150 61.3
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.6e-32 144.1 164 56.1
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.1e-32 143.7 222 48.2
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 1.8e-31 140.6 212 47.2
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.3e-31 140.2 245 39.2
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 6.7e-31 138.7 243 41.2
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.1e-30 137.9 162 51.9
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.3e-30 136.0 220 47.7
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 5.7e-30 135.6 216 46.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 1.3e-29 134.4 157 56.7
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.8e-29 133.3 75 88.0
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.7e-29 132.9 219 45.7
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 3.7e-29 132.9 201 47.3
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.1e-28 129.8 213 45.1
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 3.1e-28 129.8 238 42.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.5e-27 127.5 82 74.4
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.5e-27 125.9 148 55.4
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 4.5e-27 125.9 214 44.9
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 3.8e-26 122.9 212 45.8
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 3.8e-26 122.9 212 45.8
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 8.5e-26 121.7 195 46.2
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.4e-25 120.9 101 68.3
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.4e-25 120.9 148 51.4
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 4.2e-25 119.4 146 51.4
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.0e-23 114.8 190 45.3
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.3e-23 113.6 221 40.3
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 2.3e-23 113.6 199 40.7
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 3.9e-23 112.8 279 39.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 5.7e-22 109.0 259 39.8
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.2e-21 107.1 272 40.1
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 3.7e-21 106.3 235 44.3
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 4.1e-20 102.8 193 43.5
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 9.1e-20 101.7 256 39.1
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 8.5e-18 95.1 280 37.5
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 6.3e-13 79.0 90 52.2
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 1.1e-12 78.2 223 34.1
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 4.1e-12 76.3 220 35.0
BcaC07g38691 Brassica carinata HOM05D004123 ORTHO05D004768 7.0e-12 75.5 212 34.9
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 9.1e-12 75.1 166 36.7
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 1.0e-10 71.6 144 41.0
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.7e-10 70.9 110 44.5
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.9e-10 70.1 66 57.6
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.8e-10 69.7 43 74.4
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.8e-10 69.7 43 74.4
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 9.4e-09 65.1 142 39.4
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.2e-08 64.7 40 70.0
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 6.1e-08 62.4 213 32.4
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.4e-07 61.2 152 36.2
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 6.7e-07 58.9 146 36.3
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 6.7e-07 58.9 139 32.4
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 1.2e-06 58.2 218 28.0
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 1.2e-06 58.2 218 28.0
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 2.0e-06 57.4 213 32.9
Carub.0008s0861 Capsella rubella HOM05D000333 ORTHO05D000190 2.0e-06 57.4 86 43.0
Rhsim01G0123100 Rhododendron simsii HOM05D000333 ORTHO05D000190 3.3e-06 56.6 143 32.2
Cpa.g.sc127.8 Carica papaya HOM05D000333 ORTHO05D000190 7.5e-06 55.5 96 35.4
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 7.5e-06 55.5 115 37.4


User provided reference genes

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