Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 8.4e-160 567.0 294 100.0
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.6e-158 562.8 294 99.0
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.5e-145 518.1 316 87.3
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 9.5e-95 350.9 312 61.9
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.2e-94 348.2 312 61.5
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 5.2e-93 345.1 311 61.7
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 1.2e-92 344.0 311 62.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 9.8e-92 340.9 308 61.4
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.8e-86 322.8 306 58.5
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.3e-83 313.9 310 57.1
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.0e-72 276.2 266 60.2
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.9e-55 220.3 324 43.2
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 3.9e-48 196.1 319 39.5
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 5.1e-48 195.7 328 42.4
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 6.7e-48 195.3 341 41.3
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.5e-47 194.1 329 41.6
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.2e-44 184.5 314 39.8
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.2e-41 174.5 328 40.9
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.5e-41 172.9 298 38.3
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 4.6e-41 172.6 328 39.0
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 8.7e-40 168.3 300 39.0
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 2.8e-38 163.3 297 39.7
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.7e-38 162.9 313 36.1
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 4.1e-37 159.5 314 37.6
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.5e-36 157.5 231 47.6
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.5e-36 157.5 309 38.5
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.5e-34 149.1 315 35.6
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 7.2e-34 148.7 318 35.8
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.7e-33 146.7 317 36.0
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.7e-33 146.7 325 33.2
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 3.6e-33 146.4 306 35.9
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.6e-33 146.0 303 36.6
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 6.1e-33 145.6 324 34.6
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.0e-32 143.3 315 34.6
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 6.7e-32 142.1 314 33.1
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 8.7e-32 141.7 320 31.9
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 8.7e-32 141.7 310 35.2
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.1e-31 141.4 314 33.1
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.4e-31 138.7 314 34.7
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 7.4e-31 138.7 310 37.7
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 9.7e-31 138.3 333 35.1
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.3e-30 137.9 297 35.7
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.3e-30 137.9 315 34.6
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 2.2e-30 137.1 305 35.1
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.8e-30 136.7 325 30.8
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.8e-30 136.7 324 30.2
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 2.8e-30 136.7 304 35.2
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 3.7e-30 136.3 306 35.0
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 3.7e-30 136.3 310 35.5
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 4.8e-30 136.0 311 33.4
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.2e-30 135.2 297 35.0
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.1e-29 134.8 324 33.0
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-29 134.8 314 34.1
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.1e-29 134.8 309 34.0
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.1e-29 134.8 303 35.6
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 1.8e-29 134.0 320 32.8
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 5.3e-29 132.5 319 35.1
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 5.3e-29 132.5 322 33.5
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 4.5e-28 129.4 313 34.2
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 7.7e-28 128.6 285 35.4
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 1.7e-27 127.5 307 32.9
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 2.2e-27 127.1 282 35.1
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.8e-27 126.3 313 33.9
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 6.5e-27 125.6 312 34.9
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 8.5e-27 125.2 312 32.7
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 8.5e-27 125.2 313 34.8
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.1e-26 124.8 296 30.7
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.4e-26 124.4 306 31.7
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 2.5e-26 123.6 303 33.3
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 3.2e-26 123.2 317 34.7
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.6e-25 120.9 321 31.5
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.1e-25 120.6 306 33.0
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 2.7e-25 120.2 306 32.4
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 2.7e-25 120.2 306 32.4
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.7e-25 120.2 319 31.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.6e-25 119.4 312 34.9
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 6.1e-25 119.0 307 31.9
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 6.1e-25 119.0 307 31.9
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 6.1e-25 119.0 318 30.8
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 7.9e-25 118.6 312 32.4
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 7.9e-25 118.6 311 32.2
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.0e-24 118.2 310 33.2
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.4e-24 117.9 315 30.8
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-24 117.5 318 31.8
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-24 117.5 316 31.3
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.8e-24 117.5 311 31.5
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 5.1e-24 115.9 309 31.7
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 8.8e-24 115.2 233 37.8
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.1e-23 114.8 291 33.7
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.1e-23 114.8 307 31.6
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 2.0e-23 114.0 299 33.8
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 4.4e-23 112.8 294 32.7
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 5.7e-23 112.5 329 32.5
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.7e-22 110.9 306 30.7
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.7e-22 110.9 329 29.8
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 2.2e-22 110.5 309 32.0
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 2.8e-22 110.2 295 30.8
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 3.7e-22 109.8 316 30.4
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 3.7e-22 109.8 292 31.2
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 4.8e-22 109.4 315 28.9
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 8.2e-22 108.6 318 31.1
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.8e-21 107.5 332 29.5
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.4e-21 107.1 278 31.7
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 3.1e-21 106.7 309 33.3
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 4.1e-21 106.3 280 34.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.1e-21 106.3 310 30.0
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.5e-20 104.4 273 31.9
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.9e-20 102.4 273 31.5
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.0e-19 101.7 296 30.7
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.7e-19 100.9 316 29.4
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 8.5e-19 98.6 298 29.2
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.1e-18 98.2 320 28.1
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 1.4e-18 97.8 281 32.0
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.4e-18 97.8 309 30.4
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 3.2e-18 96.7 287 31.4
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 3.2e-18 96.7 287 31.4
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 3.2e-18 96.7 287 31.4
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.2e-18 96.7 295 29.8
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 4.2e-18 96.3 326 29.4
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.2e-17 94.7 193 36.3
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 2.1e-17 94.0 281 30.6
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.7e-17 92.8 276 28.3
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.3e-16 90.5 284 28.5
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 3.0e-16 90.1 284 28.5
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 6.7e-16 89.0 307 28.0
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 6.7e-16 89.0 288 28.8
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 8.8e-16 88.6 325 27.4
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 7.4e-15 85.5 317 24.9
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 4.8e-14 82.8 297 26.9
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 4.8e-14 82.8 291 28.5
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 3.1e-13 80.1 265 30.2
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.6e-12 77.8 265 31.7
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 3.5e-12 76.6 301 26.2
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.0e-11 75.1 143 39.9
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.9e-10 70.9 281 26.0
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 4.2e-10 69.7 144 36.1
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 7.2e-10 68.9 269 26.0
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 2.3e-08 63.9 133 31.6
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.2e-07 61.6 311 28.0
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 5.7e-07 59.3 278 24.8
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 9.7e-07 58.5 259 29.0
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.3e-06 58.2 175 30.9
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 8.2e-06 55.5 184 29.3


User provided reference genes

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