Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 7.0e-259 896.7 440 100.0
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.8e-257 891.0 440 99.3
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 7.4e-253 876.7 440 98.2
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 2.2e-228 795.4 438 89.0
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 1.0e-222 776.5 440 83.9
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 1.6e-218 762.7 439 81.5
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 7.8e-218 760.4 439 81.8
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 7.8e-218 760.4 440 82.7
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.3e-217 759.6 440 82.3
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 2.5e-216 755.4 439 80.6
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 3.3e-216 755.0 396 91.4
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 2.0e-213 745.7 438 80.6
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 3.4e-213 745.0 438 81.7
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 5.8e-213 744.2 440 80.5
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 5.8e-213 744.2 440 81.4
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 5.8e-213 744.2 440 80.9
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 9.8e-213 743.4 440 80.7
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 9.8e-213 743.4 437 80.8
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.3e-212 743.0 440 80.9
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 4.9e-212 741.1 438 79.7
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 1.1e-211 740.0 437 80.5
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 5.4e-211 737.6 440 80.5
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 7.0e-211 737.3 438 79.7
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 7.0e-211 737.3 440 79.1
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 1.2e-210 736.5 439 78.8
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 3.5e-210 734.9 438 79.5
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 6.0e-210 734.2 440 80.9
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.7e-209 732.6 440 80.0
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 3.9e-209 731.5 440 80.7
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 1.1e-208 729.9 439 78.8
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 1.5e-208 729.6 441 80.3
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 3.3e-208 728.4 439 78.4
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 4.3e-208 728.0 440 77.7
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 5.6e-208 727.6 430 79.5
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 7.3e-208 727.2 441 78.9
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 7.3e-208 727.2 440 78.4
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 9.5e-208 726.9 440 80.0
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.6e-207 726.1 438 77.9
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 3.6e-207 724.9 441 78.5
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 6.2e-207 724.2 436 78.9
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 1.1e-206 723.4 431 78.9
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 2.3e-206 722.2 438 78.3
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 6.8e-206 720.7 438 77.9
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 3.4e-205 718.4 438 78.3
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 3.4e-205 718.4 455 75.8
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 5.8e-205 717.6 438 78.1
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 1.3e-204 716.5 432 78.0
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 2.2e-204 715.7 439 78.1
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 2.9e-204 715.3 437 77.8
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 4.9e-204 714.5 432 77.3
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 1.4e-203 713.0 438 77.6
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 1.4e-203 713.0 438 77.2
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.4e-203 713.0 430 78.1
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 2.4e-203 712.2 434 77.9
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 1.2e-202 709.9 446 75.8
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 1.2e-202 709.9 438 75.3
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 1.6e-202 709.5 441 76.4
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 3.5e-202 708.4 439 77.4
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 4.6e-202 708.0 441 76.2
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 4.6e-202 708.0 438 77.6
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.0e-201 706.8 438 77.4
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.9e-201 704.9 447 75.8
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 2.5e-200 702.2 421 80.5
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 2.8e-199 698.7 420 80.2
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 1.8e-198 696.0 437 74.6
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 2.4e-198 695.7 438 75.3
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 2.4e-198 695.7 438 74.2
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 5.2e-198 694.5 432 75.0
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.2e-197 693.3 421 79.3
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.5e-197 693.0 437 76.4
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 4.4e-197 691.4 440 75.2
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 7.6e-197 690.6 440 74.3
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 9.9e-197 690.3 427 78.0
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 1.7e-196 689.5 442 76.5
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 4.9e-196 688.0 437 76.0
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 8.4e-196 687.2 424 76.4
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.6e-194 682.9 463 72.8
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 1.6e-194 682.9 437 75.7
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.8e-194 680.6 447 74.7
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 1.0e-193 680.2 417 76.7
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.6e-191 672.9 433 72.7
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 6.2e-191 671.0 454 73.3
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.8e-190 669.5 417 76.0
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 2.4e-190 669.1 423 74.9
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 2.6e-189 665.6 432 72.9
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 2.6e-189 665.6 414 75.4
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 9.3e-187 657.1 421 76.2
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 2.3e-185 652.5 440 76.4
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.5e-184 649.8 432 71.5
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 2.6e-181 639.0 496 65.7
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 2.6e-181 639.0 473 68.1
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 3.4e-181 638.6 407 74.9
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.3e-176 621.7 438 67.4
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.1e-174 617.1 434 67.1
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.2e-173 613.6 447 67.8
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 3.5e-170 602.1 356 82.0
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 2.5e-168 595.9 421 69.8
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 1.6e-167 593.2 430 69.1
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.6e-167 593.2 479 61.2
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 1.8e-166 589.7 364 78.0
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 1.3e-164 583.6 541 57.5
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 6.0e-162 574.7 393 71.2
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 1.5e-157 560.1 392 68.9
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 2.6e-157 559.3 438 64.6
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 7.9e-154 547.7 429 59.7
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 7.4e-152 541.2 441 59.6
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 8.5e-148 527.7 421 63.4
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.2e-147 525.4 435 57.9
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 1.2e-146 523.9 463 56.4
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 2.7e-146 522.7 465 58.3
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.3e-137 493.0 431 55.7
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 1.4e-129 467.2 445 52.6
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 4.7e-122 442.2 270 76.3
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 5.2e-121 438.7 412 53.4
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 2.3e-113 413.3 246 77.2
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.5e-109 399.4 244 79.5
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 7.5e-96 355.1 383 44.4
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.7e-95 354.0 196 81.6
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 6.4e-95 352.1 196 82.1
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 6.4e-95 352.1 243 74.1
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 1.1e-94 351.3 286 62.6
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 7.8e-93 345.1 503 38.6
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 7.8e-93 345.1 451 41.5
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 4.9e-63 246.1 197 64.5
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 7.1e-62 242.3 157 73.9
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.1e-54 218.4 227 49.3
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 4.1e-49 199.9 419 32.2
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 3.4e-48 196.8 246 45.9
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 6.5e-47 192.6 184 55.4
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 1.1e-43 181.8 141 63.1
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 4.1e-41 173.3 95 80.0
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 6.9e-41 172.6 152 57.2
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 8.5e-39 165.6 195 47.7
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 8.5e-39 165.6 113 64.6
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.2e-37 161.8 132 59.1
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 1.3e-34 151.8 145 55.9
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 2.9e-31 140.6 96 66.7
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 3.2e-30 137.1 86 69.8
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 2.7e-29 134.0 125 56.0
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 5.1e-28 129.8 129 54.3
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 8.2e-26 122.5 126 52.4
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 2.9e-23 114.0 126 50.8
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 8.5e-23 112.5 96 56.2
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 3.7e-18 97.1 66 68.2
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.6e-16 91.7 71 64.8
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 1.6e-16 91.7 67 70.1
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 4.7e-13 80.1 65 64.6
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.2e-12 76.6 191 31.4
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 1.1e-09 68.9 51 66.7
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 3.1e-09 67.4 40 77.5
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 1.2e-08 65.5 82 43.9
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 5.0e-07 60.1 55 54.5
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 5.0e-07 60.1 55 54.5
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 1.5e-06 58.5 53 54.7
A08p00430 Brassica napus HOM05D004472 ORTHO05D033033 9.4e-06 55.8 64 46.9
C06p10840 Brassica napus HOM05D004472 ORTHO05D033033 9.4e-06 55.8 64 46.9


User provided reference genes

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