Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 3.4e-124 448.7 303 100.0
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.5e-92 342.4 255 99.2
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.2e-89 334.0 255 93.3
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.1e-80 302.8 278 69.4
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.2e-60 237.7 262 58.0
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 2.4e-56 223.4 267 61.0
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 3.1e-56 223.0 281 73.3
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 3.2e-53 213.0 264 59.8
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 7.4e-42 175.3 254 46.5
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 9.6e-42 174.9 265 58.5
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 9.6e-42 174.9 261 44.8
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 3.7e-41 172.9 270 51.5
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.4e-40 171.0 255 46.3
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 3.1e-40 169.9 252 44.4
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.9e-40 168.7 274 41.2
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 9.0e-40 168.3 246 47.6
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 9.0e-40 168.3 254 51.6
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.4e-39 166.4 261 43.7
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.5e-39 166.0 261 43.7
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 5.8e-39 165.6 261 43.3
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 7.6e-39 165.2 239 46.4
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 9.9e-39 164.9 261 43.3
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 2.9e-38 163.3 252 46.4
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 1.4e-37 161.0 238 46.2
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 1.4e-37 161.0 242 42.6
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.2e-37 159.8 245 49.4
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 3.2e-37 159.8 236 47.5
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 5.5e-37 159.1 262 45.8
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 7.1e-37 158.7 242 47.5
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 1.2e-36 157.9 278 46.8
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 3.5e-36 156.4 245 58.4
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.6e-36 156.0 254 50.8
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 6.0e-36 155.6 259 48.3
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.0e-35 154.8 254 42.9
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.0e-35 154.8 254 42.9
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 3.0e-35 153.3 246 51.6
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.9e-35 152.9 245 55.1
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 6.7e-35 152.1 263 49.4
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.1e-34 151.4 254 39.0
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 1.9e-34 150.6 242 52.5
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 2.5e-34 150.2 276 42.0
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 2.5e-34 150.2 256 43.0
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 4.3e-34 149.4 231 54.1
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 5.6e-34 149.1 247 42.1
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 5.6e-34 149.1 273 39.9
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 2.8e-33 146.7 241 51.0
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 2.8e-33 146.7 254 42.1
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.8e-33 146.0 252 40.5
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 4.8e-33 146.0 142 60.6
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 6.2e-33 145.6 265 43.8
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.4e-32 144.4 246 54.9
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.8e-32 144.1 244 58.6
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.8e-32 144.1 248 40.7
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.8e-32 144.1 253 50.6
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 2.4e-32 143.7 245 42.9
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.4e-32 143.7 144 54.2
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 3.4e-31 139.8 256 49.2
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.0e-30 138.3 254 49.6
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.3e-30 137.9 141 58.2
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.2e-30 137.1 265 43.8
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 2.9e-30 136.7 251 40.6
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.1e-29 134.8 143 52.4
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.4e-29 134.4 132 53.0
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.9e-29 134.0 217 63.1
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 5.5e-29 132.5 164 50.0
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 9.3e-29 131.7 146 54.1
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 2.7e-28 130.2 253 39.5
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 4.6e-28 129.4 226 42.0
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.8e-27 127.5 138 52.9
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 2.3e-27 127.1 245 50.2
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 2.3e-27 127.1 141 56.0
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 3.0e-27 126.7 162 50.6
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 6.7e-27 125.6 171 48.5
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 8.7e-27 125.2 254 36.2
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.1e-26 124.8 252 45.6
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 5.7e-26 122.5 134 53.7
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 7.4e-26 122.1 167 56.9
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.3e-25 121.3 253 39.5
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 1.6e-25 120.9 160 49.4
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 2.2e-25 120.6 133 53.4
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 2.2e-25 120.6 254 35.8
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 3.7e-25 119.8 141 55.3
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 1.8e-24 117.5 252 35.3
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.4e-24 117.1 215 42.8
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 3.1e-24 116.7 135 48.1
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 1.2e-23 114.8 138 50.7
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.5e-23 114.4 133 50.4
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 2.0e-23 114.0 141 48.9
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 4.5e-23 112.8 137 50.4
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 5.9e-23 112.5 130 53.1
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.0e-22 111.7 130 51.5
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.3e-22 111.3 128 51.6
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 1.7e-22 110.9 128 50.8
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 2.2e-22 110.5 132 50.8
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.2e-22 110.5 134 50.0
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.2e-22 110.5 128 49.2
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 8.5e-22 108.6 254 47.6
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 8.5e-22 108.6 142 47.2
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 1.4e-21 107.8 134 47.8
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.9e-21 107.5 188 48.4
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 3.2e-21 106.7 128 49.2
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 4.2e-21 106.3 128 48.4
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 7.2e-21 105.5 134 47.0
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 7.2e-21 105.5 134 46.3
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 7.2e-21 105.5 135 47.4
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 7.2e-21 105.5 134 46.3
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.2e-20 104.8 134 48.5
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 1.6e-20 104.4 134 48.5
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.6e-20 104.4 127 48.8
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.1e-20 104.0 130 46.9
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 2.1e-20 104.0 136 47.1
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.7e-20 103.6 131 48.1
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 3.6e-20 103.2 134 47.8
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 3.6e-20 103.2 143 45.5
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 3.6e-20 103.2 173 46.2
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 6.1e-20 102.4 145 42.8
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 1.0e-19 101.7 133 46.6
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 1.0e-19 101.7 50 88.0
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.0e-19 101.7 135 45.9
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 2.3e-19 100.5 137 46.0
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.3e-19 100.5 131 48.1
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 3.0e-19 100.1 143 45.5
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 3.9e-19 99.8 132 47.0
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.9e-19 99.8 136 45.6
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 5.1e-19 99.4 128 46.1
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 6.7e-19 99.0 122 48.4
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.7e-19 99.0 127 46.5
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 8.8e-19 98.6 132 47.0
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 2.5e-18 97.1 130 47.7
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 2.5e-18 97.1 134 45.5
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.5e-18 97.1 132 46.2
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 2.5e-18 97.1 134 45.5
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 2.5e-18 97.1 134 45.5
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.3e-17 94.7 141 47.5
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.7e-17 94.4 128 44.5
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 3.7e-17 93.2 130 43.8
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 3.7e-17 93.2 130 43.8
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 4.8e-17 92.8 130 44.6
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.8e-17 92.8 128 42.2
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 6.3e-17 92.4 137 44.5
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 8.2e-17 92.0 134 47.0
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 2.4e-16 90.5 125 46.4
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 4.1e-16 89.7 137 40.1
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.2e-15 88.2 52 78.8
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.5e-15 87.8 130 43.8
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 3.4e-15 86.7 128 43.0
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.5e-15 86.3 49 75.5
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.9e-15 85.9 51 74.5
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 5.9e-15 85.9 49 83.7
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 5.9e-15 85.9 138 42.0
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 5.9e-15 85.9 138 42.0
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.0e-14 85.1 102 46.1
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.3e-14 84.7 130 40.8
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.2e-14 84.0 41 87.8
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 8.5e-14 82.0 45 80.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.6e-12 77.8 123 37.4
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 1.6e-12 77.8 48 75.0
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.0e-10 70.9 42 71.4
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.6e-10 70.5 54 55.6
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.3e-10 70.1 39 74.4
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 5.7e-10 69.3 41 78.0
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.2e-09 67.4 39 71.8
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.8e-08 64.3 37 70.3
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.2e-07 61.6 54 46.3
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 2.6e-07 60.5 128 35.9
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.0e-06 58.5 37 62.2
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 8.5e-06 55.5 124 29.0


User provided reference genes

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