Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.0e-242 842.0 436 100.0
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 6.6e-177 624.4 343 97.4
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.1e-175 619.4 343 97.1
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 1.2e-149 533.9 362 81.8
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.0e-137 492.7 356 77.2
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.5e-136 489.6 356 76.7
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.2e-135 484.6 356 75.8
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.9e-123 446.8 361 73.1
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.1e-120 437.6 361 70.4
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 3.2e-115 419.5 408 62.5
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.1e-112 411.0 386 63.5
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 2.6e-112 409.8 385 62.6
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.3e-112 409.5 390 62.3
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.3e-111 407.5 389 62.5
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.1e-110 402.5 385 62.3
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 7.0e-110 401.7 379 64.1
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 9.1e-110 401.4 383 64.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.5e-109 400.6 390 63.3
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 2.6e-109 399.8 367 64.6
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 2.9e-108 396.4 362 64.6
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 6.5e-108 395.2 371 64.4
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 8.5e-108 394.8 362 65.5
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 9.4e-107 391.3 382 62.0
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.2e-106 391.0 362 64.1
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 2.3e-105 386.7 360 64.7
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.0e-104 383.6 369 62.9
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 2.0e-104 383.6 387 60.7
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 2.2e-103 380.2 363 63.6
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.8e-103 379.8 350 63.7
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 3.7e-103 379.4 363 62.5
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 8.2e-103 378.3 352 63.4
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 8.2e-103 378.3 379 61.5
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.6e-101 373.2 360 62.5
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.5e-101 372.5 367 62.4
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 7.7e-101 371.7 355 62.0
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 7.7e-101 371.7 384 59.9
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.0e-100 371.3 369 61.0
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 5.0e-100 369.0 355 61.4
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 3.2e-99 366.3 286 70.6
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.2e-99 366.3 358 63.1
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.2e-99 366.3 348 64.1
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 9.4e-99 364.8 379 60.4
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 9.4e-99 364.8 337 65.3
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 3.6e-98 362.8 389 59.6
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.6e-98 362.8 378 59.3
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 4.7e-98 362.5 364 60.4
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.4e-97 360.9 396 58.6
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 1.8e-97 360.5 362 60.5
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.2e-96 357.8 349 62.2
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 9.8e-96 354.8 373 59.0
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 2.2e-95 353.6 356 61.5
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.8e-94 350.5 382 57.6
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 3.1e-94 349.7 344 61.9
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 7.0e-94 348.6 364 59.6
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 1.2e-93 347.8 344 60.8
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 2.0e-93 347.1 351 59.5
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.0e-93 347.1 351 59.5
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 5.9e-93 345.5 374 57.5
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.3e-92 344.4 353 58.9
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.7e-92 344.0 347 59.7
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 2.2e-92 343.6 355 58.6
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 2.9e-92 343.2 337 62.0
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 3.2e-91 339.7 376 56.6
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 7.2e-91 338.6 369 57.2
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.6e-90 337.4 335 59.7
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 2.7e-90 336.7 372 56.2
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.0e-89 334.7 341 58.4
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.5e-88 330.9 347 59.7
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 2.6e-88 330.1 342 59.4
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 4.4e-88 329.3 342 59.1
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 6.3e-87 325.5 343 59.5
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 3.1e-86 323.2 343 56.9
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.2e-85 321.2 341 56.6
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.6e-85 320.9 334 59.0
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 2.0e-85 320.5 339 58.4
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 2.0e-85 320.5 361 56.2
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 5.9e-85 318.9 339 58.4
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 7.7e-85 318.5 338 58.6
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 6.1e-82 308.9 337 60.5
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.4e-81 307.8 347 56.2
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 2.3e-81 307.0 347 55.3
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 5.2e-81 305.8 324 60.2
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.6e-80 303.5 484 46.5
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.2e-79 300.4 360 55.0
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 6.3e-79 298.9 341 56.6
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.1e-78 298.1 390 52.6
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 5.4e-78 295.8 384 50.3
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 9.2e-78 295.0 339 53.7
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 9.2e-78 295.0 358 53.4
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 1.6e-77 294.3 339 55.5
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.3e-76 290.4 344 55.2
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 2.9e-76 290.0 331 55.0
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 8.6e-76 288.5 341 54.0
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 3.1e-73 280.0 206 76.2
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 3.4e-72 276.6 343 51.6
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 9.8e-72 275.0 211 69.7
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 6.4e-71 272.3 340 54.1
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 6.4e-71 272.3 354 48.9
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 1.2e-64 251.5 348 48.9
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 2.6e-64 250.4 346 47.4
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.6e-61 239.6 353 47.3
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 2.3e-60 237.3 389 46.0
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 9.9e-56 221.9 209 63.6
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 5.4e-54 216.1 331 43.2
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.5e-51 208.0 373 44.2
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 3.1e-49 200.3 183 65.6
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.9e-46 191.0 146 72.6
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 7.1e-46 189.1 374 41.4
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 1.3e-44 184.9 327 40.4
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 6.9e-41 172.6 181 51.4
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 3.9e-36 156.8 251 40.2
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.1e-35 155.2 241 44.8
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 5.3e-33 146.4 267 38.6
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 3.5e-29 133.7 339 36.9
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.6e-26 124.8 87 78.2
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 1.5e-24 118.2 189 45.5
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 2.0e-24 117.9 193 45.6
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 8.2e-18 95.9 65 78.5
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.4e-17 95.1 100 58.0
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 6.5e-15 86.3 56 82.1
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 3.9e-12 77.0 50 78.0
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.7e-10 70.5 161 37.9
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 2.6e-08 64.3 49 69.4
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.8e-07 60.5 141 35.5
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 4.2e-06 57.0 254 27.6
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 5.5e-06 56.6 125 37.6


User provided reference genes

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